Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_B23
(412 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0224 - 21059328-21059888,21060388-21060462,21060715-210607... 43 1e-04
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427... 30 0.63
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178... 29 1.1
07_01_0022 - 146406-146498,146616-146693,146967-147020,147729-14... 29 1.9
01_01_0124 - 1145105-1145320,1145480-1145611,1146485-1146562,114... 29 1.9
03_05_0045 - 20220955-20221046,20221599-20221641,20221715-202217... 27 4.4
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 27 4.4
09_04_0203 - 15556064-15556561,15557537-15557581,15557852-155582... 27 5.8
07_01_0003 + 16711-17016,17107-17177,17269-17461,17929-17984,185... 27 5.8
03_02_0961 + 12759701-12760054,12760294-12760420,12760719-127611... 27 5.8
09_04_0214 + 15711576-15711891,15712615-15713903,15714410-157151... 27 7.7
08_02_1336 - 26233081-26233312,26233814-26234672,26235218-26236736 27 7.7
01_06_0955 + 33334901-33335219,33335254-33335279 27 7.7
01_01_0763 + 5898719-5899021,5899124-5899518,5899619-5899703,589... 27 7.7
>02_04_0224 -
21059328-21059888,21060388-21060462,21060715-21060798,
21060866-21061183,21061511-21061722,21061766-21062030
Length = 504
Score = 42.7 bits (96), Expect = 1e-04
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +2
Query: 119 PKELIESCFTLKKSFKVEVETFCKHYTMKEKVEKIEGFSYLPLEGPVKLKNPDITLSYLE 298
P+E T + +FK+ V++F K + +E+ + ++ +Y+P +G V LK PD +E
Sbjct: 116 PEERKLPYLTPESTFKIVVDSFGKVISFQEQNDIMKSLTYIPFKGRVNLKKPDHKFFVME 175
Query: 299 Y--YGADPNNVPEKPYDVFIGR 358
YG + P VF GR
Sbjct: 176 TDDYGCNNGLPPVAQRTVFFGR 197
>04_04_0923 +
29441740-29441980,29442321-29442401,29442630-29442719,
29443123-29443203,29443721-29443774,29444062-29444111,
29444542-29444623,29444734-29444838,29445514-29445641,
29445726-29445797,29445887-29445937,29446029-29446100,
29446201-29446278,29446446-29447270,29447648-29448556
Length = 972
Score = 30.3 bits (65), Expect = 0.63
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 369 LRAKRPINTSYGFSGTLLGSAP*YSKYDNVISGF-FNF 259
L K+ +N Y G +LG A +SKY + I+ + FNF
Sbjct: 178 LNTKKDVNLKYKDDGLILGKAKIFSKYHSEITYYIFNF 215
>03_05_0226 -
22115285-22115404,22115477-22116661,22117037-22117861,
22118029-22118106,22118370-22118420,22118510-22118581,
22118666-22118667,22119453-22119557,22119668-22119749,
22120178-22120227,22120514-22120567,22121084-22121164,
22121567-22121656,22121884-22121964,22122304-22122544
Length = 1038
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 369 LRAKRPINTSYGFSGTLLGSAP*YSKYDNVISGF-FNF 259
L K+ +N Y G +LG A +SKY + I+ + FNF
Sbjct: 178 LDTKKDVNLKYKDDGLILGKAKIFSKYHSEITYYIFNF 215
>07_01_0022 -
146406-146498,146616-146693,146967-147020,147729-147792,
147900-148018,148207-148278,148544-148596,148746-148836,
148956-149099
Length = 255
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 250 FQW*VTETFYLLNFLLHSIMFAKCFNFHFKRFL 152
F W + F+L+NFL++ + A F FH FL
Sbjct: 61 FGWTTQKVFHLMNFLVNGVR-ALVFGFHLHVFL 92
>01_01_0124 -
1145105-1145320,1145480-1145611,1146485-1146562,
1147022-1147199,1147269-1147441,1147531-1147632,
1147717-1147794,1148178-1148259,1148343-1148405,
1150196-1150275,1150529-1150723,1150812-1151073,
1151566-1151720,1151799-1151865,1151956-1152179,
1152322-1152451,1153228-1153284,1153396-1153527,
1153758-1154086
Length = 910
Score = 28.7 bits (61), Expect = 1.9
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Frame = +2
Query: 44 TALKNTCGRWLSDNSSNNISDCHICPKELIESCFTLKKSFKVEVETFCKHYTMKEKVE-K 220
TA ++ GRW+S +S++++ DC+ +E + + K KV HY +K+ +
Sbjct: 622 TAYRDNKGRWVSADSNSSLIDCY---QEKVPA----DKVTKVG-----DHYVLKDDANIR 669
Query: 221 IEGFSYLPLEGPVKLKNPDITLSYLEYYGADPNNVPEKPYDVFIGRL 361
+ +Y + + NPD +S YGAD + Y++F+G L
Sbjct: 670 LNARAYKMSKSRGNVINPDDVVS---EYGADSLRL----YEMFMGPL 709
>03_05_0045 -
20220955-20221046,20221599-20221641,20221715-20221792,
20222401-20222454,20222766-20222829,20222915-20222960,
20223049-20223121,20223530-20223601,20224023-20224075,
20224149-20224239,20226459-20226650
Length = 285
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 250 FQW*VTETFYLLNFLLHSIMFAKCFNFHFKRFL 152
F W + F+L+NF+++ + A F FH + FL
Sbjct: 77 FGWTTQKVFHLMNFVVNGVR-AVVFGFHAQVFL 108
>01_07_0290 -
42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 2 HEAKTEAQLHTNLKTALKNTCGRWLSDNSSNNISD 106
H K Q + ALK CGR S+ +N I++
Sbjct: 494 HNGKLNFQFKNDFSLALKIMCGREYSEREANQITN 528
>09_04_0203 -
15556064-15556561,15557537-15557581,15557852-15558258,
15558538-15558841,15559421-15560757,15561492-15561750
Length = 949
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 164 KVEVETFCKHYTMKEKVEKIEGFSYLPL 247
K+ + CK YTM + K EGF + P+
Sbjct: 745 KIFLAKHCKGYTMVGPIYKSEGFGFPPI 772
>07_01_0003 +
16711-17016,17107-17177,17269-17461,17929-17984,
18511-18588,18873-18929,19396-19903
Length = 422
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 296 EYYGADPNN-VPEKPYDVFIGRLALRRRL 379
E Y D NN PEKP +++GRL + + L
Sbjct: 202 EAYVVDYNNGEPEKPLILYVGRLGVEKSL 230
>03_02_0961 +
12759701-12760054,12760294-12760420,12760719-12761167,
12761369-12761590,12761672-12761980,12762092-12762430,
12762504-12762584,12762661-12762756,12762846-12763220,
12763400-12763531,12763962-12764132
Length = 884
Score = 27.1 bits (57), Expect = 5.8
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +2
Query: 233 SYLPLEGPVKLKNPDITLSYLEYYGADPNNVPEKP 337
S L P +K P + + ++Y DP+ P++P
Sbjct: 820 SVAALNRPAIVKKPGVVIKPIQYEEVDPHEKPDEP 854
>09_04_0214 +
15711576-15711891,15712615-15713903,15714410-15715117,
15715369-15715908
Length = 950
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 164 KVEVETFCKHYTMKEKVEKIEGFSY-LPLEGPV 259
KV + +C +YTM K +GF + PL P+
Sbjct: 747 KVFLSKYCHNYTMVGPTYKFDGFGFAFPLGSPL 779
>08_02_1336 - 26233081-26233312,26233814-26234672,26235218-26236736
Length = 869
Score = 26.6 bits (56), Expect = 7.7
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 77 SDNSSNNISDCHICPKELIESCFTLKK 157
SDN++N ++CH +E++ SC ++
Sbjct: 681 SDNTANKKNECHEGVQEVVPSCLAAEE 707
>01_06_0955 + 33334901-33335219,33335254-33335279
Length = 114
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 248 EGPVKLKNPDITLSYLEYYGADPNNVPEKPYDV 346
+G K K+ +I + YL+ G D ++ E+PY +
Sbjct: 75 KGRNKFKHDEIKMYYLDVEGLDDDDEYEEPYTI 107
>01_01_0763 +
5898719-5899021,5899124-5899518,5899619-5899703,
5899810-5900032,5900131-5900327,5900531-5900601,
5904034-5904218,5905914-5906068,5906241-5907632,
5907973-5908269
Length = 1100
Score = 26.6 bits (56), Expect = 7.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +2
Query: 23 QLHTNLKTALKNTCGRWLSDNSSNNISD 106
Q H ++++ L CG +SDN I +
Sbjct: 229 QKHASIRSCLTQLCGEGISDNEEQEIDE 256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,219,927
Number of Sequences: 37544
Number of extensions: 178962
Number of successful extensions: 428
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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