Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_B21
(349 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.27
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 28 0.36
SPCC338.04 |cid2||caffeine induced death protein Cid2|Schizosacc... 25 3.4
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 25 3.4
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 25 3.4
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 4.4
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 25 4.4
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 25 4.4
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 24 7.8
SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18 |Schizosa... 24 7.8
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.7 bits (61), Expect = 0.27
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -1
Query: 199 TIIDSKYDEECSDNN*PLSDIKHVKNKKRDKQTQKRNVNTQNHHI 65
T + SK DE S ++ +DI+H+KNK + + ++ + N +
Sbjct: 972 TSVKSKLDETLSKSSKLEADIEHLKNKVSEVEVERNALLASNERL 1016
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 28.3 bits (60), Expect = 0.36
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 209 FQDDEYHTSSVASGSAFYQECHCTEPGYNVEHLQW 313
FQ+ Y + SV + EPG ++ HLQW
Sbjct: 298 FQNKRYGSDSVILPGGLLHDSKLPEPGKHLFHLQW 332
>SPCC338.04 |cid2||caffeine induced death protein
Cid2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 167
Score = 25.0 bits (52), Expect = 3.4
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = -1
Query: 214 LKTCQTIIDSKYDEECSDNN*PLSDIKHVKNKKRDKQTQK 95
LK CQTI+ S+ D++ + + PL + + + + +++
Sbjct: 71 LKECQTIVRSQLDQDRNTSKSPLKSQQQLPSSSTTQVSER 110
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 25.0 bits (52), Expect = 3.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 224 YHTSSVASGSAFYQECHCTEPGYNVEHLQ 310
+H+S + S S F C+CT+P ++ LQ
Sbjct: 409 FHSSPLLSRSRFIC-CYCTKPFLSISKLQ 436
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 3.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 202 QTIIDSKYDEECSDNN*PLSDIKHVKNKKRD 110
Q ID + EEC D D +H KN + D
Sbjct: 127 QFFIDPLFLEECKDREIRAVDSEHCKNLQSD 157
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 24.6 bits (51), Expect = 4.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 127 KNKKRDKQTQKRNVNTQ 77
KNKK+ K K+NV TQ
Sbjct: 35 KNKKKKKPKAKKNVETQ 51
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 24.6 bits (51), Expect = 4.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 200 LACFQDDEYHTSSVASGSAFYQECHCTEPGYN 295
LAC ++ E H + + Y E PGYN
Sbjct: 258 LACIKNGEVHKGLINISTYNYLEGSVVVPGYN 289
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 24.6 bits (51), Expect = 4.4
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 202 QTIIDSKYDEECSDNN*PL-SDIKHVKNKKRDKQTQKR 92
+++ + + DE + P+ S K KNKK+ K+ QK+
Sbjct: 71 KSVSEEEQDEPLVEGESPIVSTNKKAKNKKKKKKQQKK 108
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 23.8 bits (49), Expect = 7.8
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = -1
Query: 145 SDIKHVKNKKRDKQTQKRNVNTQNHHIKILSLYRSFILK 29
S+I +++ R +K + T+N +K+ S+ R F+L+
Sbjct: 819 SNIIKLQSLWRTALKRKEFIQTKNSILKVQSIIRGFLLR 857
>SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 142
Score = 23.8 bits (49), Expect = 7.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 148 LSDIKHVKNKKRDKQTQKRNV 86
L IK ++NK RD Q ++NV
Sbjct: 18 LRKIKQLENKTRDSQEVQKNV 38
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,257,074
Number of Sequences: 5004
Number of extensions: 20124
Number of successful extensions: 68
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -