Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_B21
(349 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653... 28 2.3
01_06_0104 + 26486155-26486328,26486903-26486995 28 2.3
01_06_1580 - 38406740-38407257,38407481-38407552,38408309-384083... 27 3.1
07_03_1779 - 29458889-29459249,29461107-29461283,29461374-294615... 27 4.0
02_05_1224 + 35045268-35045270,35045735-35045863,35046037-350461... 27 4.0
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037... 27 4.0
05_07_0260 - 28739035-28739085,28739316-28739596,28740545-287405... 26 7.1
01_06_0947 + 33238398-33238469,33238721-33238968,33239063-332393... 26 7.1
12_02_0504 - 19771191-19772134,19772210-19774892 26 9.3
10_08_0614 - 19238064-19238132,19238381-19238407,19238436-192385... 26 9.3
>03_02_0870 +
11964135-11964224,11965013-11965175,11965262-11965380,
11965971-11966083,11966179-11966234,11966320-11966417,
11966588-11966725,11966820-11967125,11967208-11967471,
11967587-11967754,11967838-11968056,11968115-11968158,
11968761-11968830,11968949-11969110,11969672-11969779,
11969873-11969910,11970121-11970265,11970800-11970926,
11971037-11971230,11971529-11971659,11972014-11972089,
11972218-11972328,11972465-11972647,11973264-11973407,
11973946-11973969,11974555-11974728,11974808-11975155,
11975232-11975561,11975776-11975961,11976052-11977026,
11977145-11977399
Length = 1852
Score = 27.9 bits (59), Expect = 2.3
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -1
Query: 340 CYDLTIIIKPLEVFDIVTWF 281
CYDL II+P +VF++V+ +
Sbjct: 859 CYDLLSIIEPRQVFELVSLY 878
>01_06_0104 + 26486155-26486328,26486903-26486995
Length = 88
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 112 DKQTQKRNVNTQNHHIKILSLY 47
DK+ Q N NT H IKIL Y
Sbjct: 22 DKKQQTSNANTSRHSIKILDPY 43
>01_06_1580 -
38406740-38407257,38407481-38407552,38408309-38408365,
38408476-38408532,38408643-38408699,38408809-38408865,
38409371-38409424,38409744-38409800,38410023-38410076,
38412208-38412220,38413530-38413580,38414134-38414193,
38414640-38414761,38415033-38415894,38416468-38416667,
38417159-38417238,38417525-38417619
Length = 821
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -1
Query: 190 DSKYDEECSDNN*PLSDIKHVKNKKRDKQTQKRNVNTQNH-HIKILSLYRSFILKTRAQS 14
DS+ DE P + +K + +RD + K+ NH ++K++ L R+ I+ Q
Sbjct: 318 DSEDDEGRIMRKRPCNTLKAAETSERDPKRNKKCFAALNHNNLKLIYLRRTLIMNLMGQD 377
Query: 13 S 11
+
Sbjct: 378 T 378
>07_03_1779 -
29458889-29459249,29461107-29461283,29461374-29461573,
29461673-29462752
Length = 605
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 207 VFKMTNITRRQWHQVVLFTKSAIVLNQVTMSN-TSNGLIIIVRS 335
+F ++ R QW +V +SAI Q T++ +NG + + R+
Sbjct: 316 MFVGDSLNRNQWESMVCLVQSAIPYGQKTLTKFVNNGSLNVFRA 359
>02_05_1224 + 35045268-35045270,35045735-35045863,35046037-35046180,
35046306-35046451,35046583-35046739,35046838-35046896,
35046978-35047137,35047716-35047865,35047969-35048105,
35048186-35048332,35048428-35048540,35048880-35048971,
35049637-35049738,35050108-35050145,35050255-35050381,
35050462-35050632,35050721-35050852,35050929-35051038,
35051118-35051178,35051386-35051427,35051756-35051933,
35052043-35052248,35052843-35052962,35053138-35053182,
35053310-35053408,35053846-35054058,35054254-35054393,
35054469-35054583,35054684-35054722,35054816-35054899,
35054969-35055139,35055891-35056100,35056193-35056378,
35056473-35056601,35056679-35056749,35056834-35056933,
35057016-35057072,35057778-35057834,35057940-35058020,
35058256-35058338,35058448-35058562
Length = 1572
Score = 27.1 bits (57), Expect = 4.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 209 FQDDEYHTSSVASGSAFYQECHCTEPGYNVEHLQW-LDNNSKI 334
+ DD+Y+T SV+S TE N E + LD+NS I
Sbjct: 1494 YWDDKYNTQSVSSDVLSNMRVLMTEDSNNAESSSFLLDDNSSI 1536
>02_01_0138 +
999809-999821,1000456-1001341,1001424-1003221,
1003716-1003805,1004034-1004111,1004513-1004518,
1004849-1004958,1005174-1005369
Length = 1058
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -3
Query: 308 GGVRHCNLVQYNGTLGKKHYLMPLTTCDIRHLEN 207
G ++H L Y+G + +T+ + HLEN
Sbjct: 160 GNLKHLQLTGYSGATSPTWFASKVTSLQVLHLEN 193
>05_07_0260 -
28739035-28739085,28739316-28739596,28740545-28740572,
28740653-28740749,28741216-28741272,28741353-28741415,
28741533-28741621,28741779-28741865,28742041-28742162,
28742245-28742500,28742595-28742744,28743120-28743278,
28743820-28743892,28743968-28744024,28744115-28744243,
28744469-28744560,28745220-28745252
Length = 607
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = -1
Query: 121 KKRDKQTQKRNVNTQNHHIKILSLYRSFILKTRA 20
+ + T+ RN++T+ + I+ +++ SF+L+ RA
Sbjct: 66 QSKSPSTKLRNMSTKANLIRFITMDESFLLENRA 99
>01_06_0947 +
33238398-33238469,33238721-33238968,33239063-33239321,
33240660-33240839,33240922-33241077,33241176-33241337
Length = 358
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -1
Query: 196 IIDSKYDEECSDNN*PLSDIKHVKNKKRDKQTQKRNVNTQNHHIKILSLYRS 41
+I+ + ++ C D + P+++I +V D ++K T ILS+ RS
Sbjct: 75 MIEKEREKLCQDPSIPVTEIPYVHYPTPDTYSRKECACTPVRFFAILSMQRS 126
>12_02_0504 - 19771191-19772134,19772210-19774892
Length = 1208
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 272 GTLGKKHYLMPLTTCDIRHLENM 204
G L K+ YL L T +RH EN+
Sbjct: 902 GLLEKQQYLQSLKTLLVRHCENL 924
>10_08_0614 -
19238064-19238132,19238381-19238407,19238436-19238510,
19238637-19239317,19239423-19239554,19239676-19239723,
19239828-19239878,19240015-19240134,19241121-19241261,
19241701-19241865,19241981-19242160,19242314-19242445,
19242536-19242643,19242779-19242883,19243217-19243321,
19243407-19243463,19243991-19244010,19244299-19244377,
19245021-19245080,19245562-19245615,19246535-19246600,
19246938-19246990,19247361-19247450,19248152-19248249,
19248348-19248721
Length = 1029
Score = 25.8 bits (54), Expect = 9.3
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = -1
Query: 202 QTIIDSKYDEECSDNN*PLSDIKHVKNKKRDKQTQKRNVNTQNHHIKILSLYRSFILKTR 23
QTI +K +CS+ L +++ N+ +Q Q++NV K+L L + L T
Sbjct: 669 QTI--TKLTAQCSEKAFEL-ELRSADNRVLQEQLQQKNVEINELQEKVLRLEQQ--LTTN 723
Query: 22 AQSSP 8
++SP
Sbjct: 724 TEASP 728
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,894,335
Number of Sequences: 37544
Number of extensions: 119116
Number of successful extensions: 416
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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