Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_B20
(498 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 66 2e-12
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 60 2e-10
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 59 4e-10
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 52 4e-08
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 46 2e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 45 6e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 44 1e-05
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 44 1e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 44 2e-05
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 42 4e-05
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 42 5e-05
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 40 2e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 39 5e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 38 6e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 38 0.001
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 37 0.002
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 36 0.003
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 36 0.003
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 34 0.010
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 34 0.010
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 34 0.010
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 33 0.018
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 33 0.018
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 33 0.032
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 31 0.13
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.13
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 30 0.17
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 30 0.22
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 29 0.39
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 29 0.39
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 29 0.51
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 28 0.90
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 27 1.2
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.1
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 27 2.1
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 2.1
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr... 26 2.7
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 2.7
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.6
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 26 3.6
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 3.6
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 25 4.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 4.8
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 4.8
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 6.3
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 25 6.3
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 25 6.3
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom... 25 8.4
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 66.5 bits (155), Expect = 2e-12
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Frame = +2
Query: 11 AADVETKMPGAGTF-KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGF 163
A+ V T A T ++VG L T+A L LF G V + R+ Y +
Sbjct: 66 ASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAY 125
Query: 164 VHMENEQVGREAIQNLNGELVHGQGIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVR 340
V+ N + G +A+ LN L+ G+ +I + + T +F+ NL +
Sbjct: 126 VNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALH 185
Query: 341 ELFQKFGTVVECDIV-------RNYGFVHLDATGDVNEAIKELNGLMVDGQPMKV 484
+ F FG ++ C + + YGFVH D+ N AI+ +NG++++ + + V
Sbjct: 186 DTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
Score = 58.0 bits (134), Expect = 7e-10
Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 21/168 (12%)
Frame = +2
Query: 44 GTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAI 202
GT +F+ NL + L F +G ++ C + + YGFVH ++ + AI
Sbjct: 166 GTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAI 225
Query: 203 QNLNGELVHGQGIKIEAAKSRK-------APSTPTTKIFVGNLTDKTRAPEVRELFQKFG 361
+++NG L++ + + + SR+ A T +++ NL + E +LF +FG
Sbjct: 226 EHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFG 285
Query: 362 TVVECDIV-------RNYGFVHLDATGDVNEAIKELNGLMVDGQPMKV 484
+ +V R +GFV+ +A+ ELN G+ + V
Sbjct: 286 EITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYV 333
Score = 54.0 bits (124), Expect = 1e-08
Identities = 40/177 (22%), Positives = 77/177 (43%), Gaps = 31/177 (17%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 214
+++ NL + T+ + LF ++G + +V R +GFV+ N + ++A+ LN
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 215 GELVHGQGIKI-----------------EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 343
+ G+ + + E K K +F+ NL D+ ++
Sbjct: 323 DKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKA 382
Query: 344 LFQKFGTVVECDIV-------RNYGFVHLDATGDVNEAIKELNGLMVDGQPMKVQLS 493
F FGT+ I+ + +GFV + N+A+ E+N M+ G+P+ V L+
Sbjct: 383 EFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439
Score = 32.7 bits (71), Expect = 0.032
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Frame = +2
Query: 254 AKSRKAPS--TPTT-KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGF 400
A S PS PT+ ++VG L + ELF G V + R+ Y +
Sbjct: 66 ASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAY 125
Query: 401 VHLDATGDVNEAIKELNGLMVDGQPMKVQLS 493
V+ D +A+ ELN ++ G+P ++ S
Sbjct: 126 VNFHNMEDGEKALDELNYTLIKGRPCRIMWS 156
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 59.7 bits (138), Expect = 2e-10
Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 18/163 (11%)
Frame = +2
Query: 53 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 232
++FVG + + T D+ F+ YG +++C ++ +GFV +E+ + R+ + + G+ G
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFMG 64
Query: 233 QGIKIEAAKSRK---------------APSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 367
I +E A+ + P ++ V NL++ +++++ +K G
Sbjct: 65 SRIVVEPARGERRRRENFRESAASKYPRPRRTGFRLIVENLSEDVSWQDLKDVMRKAGEP 124
Query: 368 VECDIVR---NYGFVHLDATGDVNEAIKELNGLMVDGQPMKVQ 487
D R G V D+ A+ LNG ++ GQ + ++
Sbjct: 125 TFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTLR 167
Score = 41.9 bits (94), Expect = 5e-05
Identities = 14/67 (20%), Positives = 36/67 (53%)
Frame = +2
Query: 287 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNEAIKELNGLMVD 466
T++FVG + + ++ + F+ +G +++C ++ +GFV ++ D + + + G
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFM 63
Query: 467 GQPMKVQ 487
G + V+
Sbjct: 64 GSRIVVE 70
Score = 39.5 bits (88), Expect = 3e-04
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Frame = +2
Query: 50 FKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVR---NYGFVHMENEQVGREAIQNLNGE 220
F++ V NLS+ + DL+ + K G D R G V E+ R A+ +LNGE
Sbjct: 98 FRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGE 157
Query: 221 LVHGQGIKIEA---AKSRKAPSTPT 286
++ GQ + + A + P P+
Sbjct: 158 VIKGQAVTLREDPDAANEPLPEVPS 182
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 58.8 bits (136), Expect = 4e-10
Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 16/164 (9%)
Frame = +2
Query: 53 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 208
K+F+G L+ +TTD LR FE++G V++C ++R+ +GF+ +N + E +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 209 LNGELVHGQGIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV- 385
+ + G+ I + A R+ T K+FVG + E R F +FG V++ ++
Sbjct: 224 EHH--LDGKIIDPKRAIPRE-EQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMM 280
Query: 386 -------RNYGFVHLDATGDVNEAIKELNGLMVDGQPMKVQLST 496
R +GFV + V EA + + G+P++V+ +T
Sbjct: 281 DKDTGRPRGFGFVTYENESAV-EATMSQPYITIHGKPVEVKRAT 323
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 52.4 bits (120), Expect = 4e-08
Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTVVEC----DIVRN----YGFVHMENEQVGREAIQNL 211
I++GNL +K TD+ L L + G VV D VRN +GF +EQ A Q L
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 212 NGELVHGQGIKIEAAKSRKAPSTPT-TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV- 385
N + G+ I++ A + +T +FVGNL + + F G +V+ V
Sbjct: 73 NQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVA 132
Query: 386 -------RNYGFVHLDATGDVNEAIKELNGLMVDGQPMKV 484
+ YGFV D+ + AI+ +N + +P+ V
Sbjct: 133 RDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITV 172
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 46.4 bits (105), Expect = 2e-06
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 211
+FV ++ + + +L+ +F K+GTV I+R +GF+ + AI NL
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 212 NGELVHGQGIKIEAAKSRKAPSTPTTKIFVG 304
N + +G+ + ++ AK R P +PT ++G
Sbjct: 163 NSQEFYGRVLNVQKAK-RSRPHSPTPGKYMG 192
Score = 37.1 bits (82), Expect = 0.001
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 13/111 (11%)
Frame = +2
Query: 194 EAIQNLNGELV--HGQGIKIEAAKSRKAPSTPTT---KIFVGNLTDKTRAPEVRELFQKF 358
E +Q++N + V + + ++ + + AP +FV + + + E++++F KF
Sbjct: 65 EPLQSMNEDEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKF 124
Query: 359 GTVVECDIV--------RNYGFVHLDATGDVNEAIKELNGLMVDGQPMKVQ 487
GTV I+ R +GF+ + AI LN G+ + VQ
Sbjct: 125 GTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQ 175
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 45.2 bits (102), Expect = 6e-06
Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 31/174 (17%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 211
+FV NL+ +T DL F G + +V N YGFV + + A + L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 212 NGELVHGQGIKIEAAKSRKAPSTPT---------------TKIFVGNLTDKTRAPE-VRE 343
+ +HG+ ++++ A RK T ++ + NL + P+ +
Sbjct: 67 KNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEP 126
Query: 344 LFQKFGTVVECDI-------VRNYGFVHLDATGDVNEAIKELNGLMVDGQPMKV 484
F KFG V E I + + FV + EA+ LNG +DG+P+ V
Sbjct: 127 HFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAV 180
Score = 32.7 bits (71), Expect = 0.032
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +2
Query: 293 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNEAIKEL 448
+FV NL +T+ ++ F G + +V N YGFV D A KEL
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 449 NGLMVDGQPMKVQLST 496
+ G+ +++ +T
Sbjct: 67 KNKKLHGRILRLDFAT 82
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 44.4 bits (100), Expect = 1e-05
Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 32/182 (17%)
Frame = +2
Query: 47 TFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI 202
T +FVG LS D L FE+YGT+V ++ + YG+V E + + A+
Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321
Query: 203 QNLNGELVHGQGIKIEAAKSRKAP----------------STPTTKIFVGNLTDKTRAPE 334
+ + G+ + ++ + R A S P+ +FVGNL+ +
Sbjct: 322 AANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDD 381
Query: 335 VRELFQKFGTVVECDI--------VRNYGFVHLDATGDVNEAIKELNGLMVDGQPMKVQL 490
+ F G + + ++ +G+V + + E+NG + G+P ++
Sbjct: 382 LSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EMNGHFIAGRPCRLDF 440
Query: 491 ST 496
ST
Sbjct: 441 ST 442
Score = 28.7 bits (61), Expect = 0.51
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Frame = +2
Query: 275 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVN 430
S T +FVG L+ + + F+++GT+V ++ + YG+V + T +
Sbjct: 259 SNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFE-TPEAA 317
Query: 431 EAIKELNGLM-VDGQPMKVQLS 493
+A NG +DG+ + + LS
Sbjct: 318 KAAVAANGTKEIDGRMVNLDLS 339
Score = 27.9 bits (59), Expect = 0.90
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTVVECDI--------VRNYGFVHMENEQVGREAIQNL 211
+FVGNLS T+ DL F G + + ++ +G+V + ++ ++ +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-M 426
Query: 212 NGELVHGQGIKIEAAKSR 265
NG + G+ +++ + R
Sbjct: 427 NGHFIAGRPCRLDFSTPR 444
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 44.0 bits (99), Expect = 1e-05
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 38/176 (21%)
Frame = +2
Query: 50 FKIFVGNLSDKTTDADLRPLFEK-YGTVVECDIV--------RNYGFVHMENEQVGREAI 202
F IFVG+L T D+DL F Y + I+ R YGFV +E+ + A+
Sbjct: 182 FSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHAL 241
Query: 203 QNLNGELVHGQGIKIEAAKSRKAPS---------TPT------------------TKIFV 301
++ G L G+ ++I A + S PT T +FV
Sbjct: 242 MHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFV 301
Query: 302 GNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNEAIKELNGLMV 463
G L +++ FQ FG ++ I + GFV +AI + G +V
Sbjct: 302 GGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALV 357
Score = 30.7 bits (66), Expect = 0.13
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Frame = +2
Query: 281 PTTKIFVGNLTDKTRAPEVRELFQK-FGTVVECDIV--------RNYGFVHLDATGDVNE 433
P IFVG+L T ++ F+ + + I+ R YGFV + +
Sbjct: 180 PEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQH 239
Query: 434 AIKELNGLMVDGQPMKVQLST 496
A+ + G + G+P+++ +++
Sbjct: 240 ALMHMQGYLCQGRPLRISVAS 260
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 43.6 bits (98), Expect = 2e-05
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 25/155 (16%)
Frame = +2
Query: 95 DLRPLFEKYGTVVECDIVRNY-------GFVHMENEQVGREAIQNLNGELVHGQGI---- 241
DL+ LF + G+V+ DI N G V M + + AIQ L+ G+ +
Sbjct: 198 DLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRL 257
Query: 242 ------KIEAAKSRKAPSTPTTK-IFVGNLTDKTRAPEVRELFQKFGTVVECDIV----- 385
KIE P P + I+VGNL T + +LF G+V+ I
Sbjct: 258 DRFAHHKIEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTG 317
Query: 386 --RNYGFVHLDATGDVNEAIKELNGLMVDGQPMKV 484
+ +G V + D +I++LNG G+P+++
Sbjct: 318 RSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQL 352
Score = 41.9 bits (94), Expect = 5e-05
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 214
I+VGNL T+D +L LF G+V+ I + +G V ENE +I+ LN
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 215 GELVHGQGIKIEAAK-SRKAPSTPT 286
G G+ +++ A + P+ PT
Sbjct: 342 GYRYGGRPLQLSYAHYATPLPAVPT 366
Score = 31.5 bits (68), Expect = 0.073
Identities = 43/191 (22%), Positives = 82/191 (42%), Gaps = 45/191 (23%)
Frame = +2
Query: 53 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNL 211
+++VGNLS + +L+ + G V+ C+I+ + + + R AI+ L
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 126
Query: 212 N-----GELVH-----------GQGIKIEAAKSRKAPSTPTTKIFVGNLTD--------- 316
+ G LV+ G +A S S P ++FVGN++
Sbjct: 127 SNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVGNVSSISNPLYSFP 186
Query: 317 KTRAP------EVRELFQKFGTVVECDI-------VRNYGFVHLDATGDVNEAIKELNGL 457
+T P ++++LF++ G+V+ DI R G V + + + AI+ L+
Sbjct: 187 RTLLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNT 246
Query: 458 MVDGQPMKVQL 490
G+ ++V+L
Sbjct: 247 DFMGRTLEVRL 257
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 42.3 bits (95), Expect = 4e-05
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Frame = +2
Query: 2 HEVAADVETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDI----VR------ 151
H A T A F++FVG LS T +++R LFE GTV + I VR
Sbjct: 28 HASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLV 87
Query: 152 --NYGFVHMENEQVGREAIQNLNGELVHGQGIKIEAAK 259
FV N++ +AI+ LNG+ + + I ++ A+
Sbjct: 88 PSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKAR 125
Score = 38.3 bits (85), Expect = 6e-04
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 12/78 (15%)
Frame = +2
Query: 290 KIFVGNLTDKTRAPEVRELFQKFGTVVECDI----VR--------NYGFVHLDATGDVNE 433
++FVG L+ T+ E+R LF+ GTV + I VR FV + DV++
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 434 AIKELNGLMVDGQPMKVQ 487
AI+ LNG +D + + VQ
Sbjct: 105 AIETLNGKTLDDREIVVQ 122
Score = 25.8 bits (54), Expect = 3.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 149 RNYGFVHMENEQVGREAIQNLNGELVHGQGIKIEAAKSRK 268
R +GFV N + AI+ +NG+ V + +++A R+
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFRE 297
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 386 RNYGFVHLDATGDVNEAIKELNGLMV 463
R +GFV D + AI+E+NG V
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQV 283
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 41.9 bits (94), Expect = 5e-05
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Frame = +2
Query: 50 FKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQN 208
F++FVGNL + D L F +Y ++V+ +VR+ +GFV ++ +A +
Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWRE 89
Query: 209 LNGELVHGQGIKIEAAKSRKAPSTPTTK 292
NG+ + + +K+ A S P+ K
Sbjct: 90 KNGKYIGSRPVKLSRATSDVKPNEVNEK 117
Score = 34.7 bits (76), Expect = 0.008
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Frame = +2
Query: 290 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNEAIKEL 448
++FVGNL + + + F ++ ++V+ +VR+ +GFV + +A +E
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 449 NGLMVDGQPMKVQLST 496
NG + +P+K+ +T
Sbjct: 91 NGKYIGSRPVKLSRAT 106
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 40.3 bits (90), Expect = 2e-04
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +2
Query: 53 KIFVGNLSDKT-TDADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVH 229
++F+G+L+ K+ + +L +F+ YG + + + NYGFV + A+ G V
Sbjct: 364 RLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFVR 423
Query: 230 GQGIKIEAAKSRK 268
GQ + +E +K +K
Sbjct: 424 GQKLHLEISKIQK 436
Score = 35.9 bits (79), Expect = 0.003
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +2
Query: 287 TKIFVGNLTDKTRAPE-VRELFQKFGTVVECDIVRNYGFVHLDATGDVNEAIKELNGLMV 463
+++F+G+L K+ + + ++F+ +G + + + NYGFV D A+ G V
Sbjct: 363 SRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFV 422
Query: 464 DGQPMKVQLS 493
GQ + +++S
Sbjct: 423 RGQKLHLEIS 432
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 38.7 bits (86), Expect = 5e-04
Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 24/171 (14%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 211
+++G L T+A ++ ++ G V+ ++RN Y FV + A+ ++
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SM 153
Query: 212 NGELVHGQG--IKIEAA-----KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQ------ 352
N + + G K+ A + + IFVG+L+ +V LF
Sbjct: 154 NNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSC 213
Query: 353 ---KFGTVVECDIVRNYGFVHLDATGDVNEAIKELNGLMVDGQPMKVQLST 496
K T + ++ R YGFV D A+ E+ G + +P++V L+T
Sbjct: 214 KSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLAT 264
Score = 38.3 bits (85), Expect = 6e-04
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 229
+FVG LS ++ +L+ LF+ +G +V I + GFV N Q AI L G +
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLG 364
Query: 230 GQGIKIEAAKSRKAPSTP 283
I++ +++ + P
Sbjct: 365 NSRIRLSWGRNQNPIAAP 382
Score = 32.3 bits (70), Expect = 0.042
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 278 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNEAIKELN 451
T + +FVG L+ E++ LFQ FG +V I + GFV AI +L
Sbjct: 300 TANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQ 359
Query: 452 G 454
G
Sbjct: 360 G 360
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 38.3 bits (85), Expect = 6e-04
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 211
+FV L+ T D DL +F ++G ++ C ++R+ Y F+ +N++ +A +
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 212 NGELVHGQGIKIEAAKS 262
L+ I ++ ++S
Sbjct: 306 QNVLIDDSRIHVDFSQS 322
Score = 37.1 bits (82), Expect = 0.001
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Frame = +2
Query: 281 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNEA 436
P +FV L T+ ++ +F +FG ++ C ++R+ Y F+ D V +A
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301
Query: 437 IKELNGLMVDGQPMKVQLS 493
++ +++D + V S
Sbjct: 302 YFKMQNVLIDDSRIHVDFS 320
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 37.5 bits (83), Expect = 0.001
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Frame = +2
Query: 275 STPTT---KIFVGNLTDKT--RAPEVRELFQKFGTVVEC--------DIVRNYGFVHLDA 415
STPT +FV NL D ++ ELF KFG + C +I + YGFV
Sbjct: 412 STPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSH 471
Query: 416 TGDVNEAIKELNGLM 460
+ +AI LNG++
Sbjct: 472 PFEAVQAINTLNGVL 486
Score = 36.3 bits (80), Expect = 0.003
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 10/101 (9%)
Frame = +2
Query: 26 TKMPGAGTFKIFVGNLSDKTTD--ADLRPLFEKYGTVVEC--------DIVRNYGFVHME 175
T P +FV NL D L LF K+G + C +I + YGFV
Sbjct: 411 TSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFS 470
Query: 176 NEQVGREAIQNLNGELVHGQGIKIEAAKSRKAPSTPTTKIF 298
+ +AI LNG L + + + A+ R+ + IF
Sbjct: 471 HPFEAVQAINTLNGVLFGKKRLFVNYAEKREDRKKRLSAIF 511
Score = 33.1 bits (72), Expect = 0.024
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN-------------YGFVHMENEQVGRE 196
I+VGNL +DL LFE +G + ++ + F+ EN+
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 197 AIQNLNGELVHGQGIKIE 250
AI +LNG G +K+E
Sbjct: 82 AIASLNGSSFQGNTLKVE 99
Score = 30.3 bits (65), Expect = 0.17
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Frame = +2
Query: 257 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------------YG 397
K++++ I+VGNL ++ ++ ELF+ FG + ++ +
Sbjct: 10 KNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFA 69
Query: 398 FVHLDATGDVNEAIKELNGLMVDGQPMKVQ 487
F+ + + AI LNG G +KV+
Sbjct: 70 FITFENKCSADNAIASLNGSSFQGNTLKVE 99
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 36.7 bits (81), Expect = 0.002
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Frame = +2
Query: 215 GELVHGQGIKIEAAKSRKAPST---------PTTKIFVGNLTDKTRAPEVRELFQKFGTV 367
G + HG+ +K+ A+ P + + +F+GNL E+ E F KFG +
Sbjct: 266 GFIFHGRPLKLTFARPSPLPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKI 325
Query: 368 VECDIV--RNYGFVHLDATGDVNEAIKELNGLMVD 466
I+ +N FVH ++ +AIK + L D
Sbjct: 326 EHIKILSKKNIAFVHF---LNIRDAIKVVRTLSCD 357
Score = 30.7 bits (66), Expect(2) = 0.005
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 41 AGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLN 214
A + +F+GNL + ++ F K+G + I+ +N FVH N + + ++ L+
Sbjct: 296 AASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLS 355
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--YGFVHMENEQVGREAIQNL 211
++ ++SD T +L + +YG + ++N GFV N +A+ L
Sbjct: 502 VYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKAVNGL 555
Score = 23.4 bits (48), Expect(2) = 0.005
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = +2
Query: 248 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFG 361
+ + +++ +F+GNL KT+ E+ +L + G
Sbjct: 396 DRCRQQESKDNGNRTVFLGNLHTKTKGHEICDLIRHGG 433
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 36.3 bits (80), Expect = 0.003
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNL 211
+F+GNL + T+ ++R E +G + + IV RN FVH N +A+Q L
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQEL 261
Score = 34.3 bits (75), Expect = 0.010
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 293 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNEAIKEL 448
+F+GNL + E+RE + FG + + IV RN FVH +A++EL
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQEL 261
Score = 27.5 bits (58), Expect = 1.2
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 14 ADVETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVR--NYGFVHMENEQV 187
+++ + G + I++GN D T L+ FE++G + + R N FV+ +
Sbjct: 402 SNIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLAS 461
Query: 188 GREAIQNL 211
AI +
Sbjct: 462 AINAIDRI 469
Score = 27.1 bits (57), Expect = 1.6
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Frame = +2
Query: 200 IQNLNGELVHGQGIKIEAAK-SRKAPST--------PTTKIFVGNLTDKTRAPEVRELFQ 352
+ N++G ++ + +KI K S PS + I++GN D ++E F+
Sbjct: 376 MSNIHGLVIRNRRLKIGWGKHSGPLPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFE 435
Query: 353 KFGTVVECDIVR--NYGFVHLDATGDVNEAIKEL 448
+FG + + R N FV+ + AI +
Sbjct: 436 EFGEIEYVNFFREKNCAFVNFTSLASAINAIDRI 469
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 35.9 bits (79), Expect = 0.003
Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 29/174 (16%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 211
+FV L+++ T +L FE+ G V + IVR+ +V +E + AI L
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA-L 300
Query: 212 NGELVHGQGIKI---EAAKSRKA-----------PSTPTTKIFVGNLTDKTRAPEVRELF 349
+G+ + G + + EA K+RKA P ++ V N+ +V+ +F
Sbjct: 301 SGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIF 360
Query: 350 QKFGTVVECDIVRN-------YGFVHLDATGDVNEAIKELNGLMVDGQPMKVQL 490
+ FG + + R+ +G++ A++++NG + G+ M+V L
Sbjct: 361 EPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCL 414
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 34.3 bits (75), Expect = 0.010
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Frame = +2
Query: 281 PTTKIFVGNLTDKTRAPE----VRELFQKFGTVVECDIVRN-----YGFVHLDATGDVNE 433
P +FV +L E V++ FQ++G ++ ++++ Y FV T D ++
Sbjct: 77 PVACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDASK 136
Query: 434 AIKELNGLMVDGQPMKVQ 487
A+ E ++DG+ ++++
Sbjct: 137 ALSEAQNTILDGRHIRIE 154
Score = 32.3 bits (70), Expect = 0.042
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +2
Query: 35 PGAGTFKIFVGNLSD-KTTDADLRPLFEKYGTVVECDIVRN-----YGFVHMENEQVGRE 196
P + IFVG L T L LF KYG V++C I+ + F+ +++Q
Sbjct: 360 PPIDPYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYA 419
Query: 197 AI 202
A+
Sbjct: 420 AV 421
Score = 25.0 bits (52), Expect = 6.3
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 272 PSTPTTKIFVGNLTDKTRAPE--VRELFQKFGTVVECDIV 385
P IFVG L D + +LF K+G V++C I+
Sbjct: 360 PPIDPYSIFVGQL-DPVNCTHYLLVDLFSKYGKVIDCKII 398
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 34.3 bits (75), Expect = 0.010
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 281 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNEAIKELNG 454
PT ++VGNL A V F +GTV ++ ++ F++ D+ ++ELNG
Sbjct: 585 PTHALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNG 644
Score = 33.9 bits (74), Expect = 0.014
Identities = 31/152 (20%), Positives = 65/152 (42%), Gaps = 7/152 (4%)
Frame = +2
Query: 14 ADVETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--RNYGFVHMENEQV 187
A +E T ++VGNL + + F YGTV ++ ++ F++ ++ +
Sbjct: 575 ATIENLTQHEPTHALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVET 634
Query: 188 GREAIQNLNGELVH--GQGIKIEAAKSRKAPSTPTTKIFVG---NLTDKTRAPEVRELFQ 352
+ ++ LNG+ + + I AK + S + G ++ + P +RE++
Sbjct: 635 AKHVLEELNGKRIFFGSDPVCISFAKVASSSSESSHSAVDGLNKAFSNVSFVPSLREVYD 694
Query: 353 KFGTVVECDIVRNYGFVHLDATGDVNEAIKEL 448
++V+++GF L + A EL
Sbjct: 695 DL-----INVVQSFGFKDLSKIYQILNAACEL 721
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 34.3 bits (75), Expect = 0.010
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTVV-------ECDIVRNYGFVHMENEQVGREAIQNLN 214
+ VGNL+ T++ L F +G ++ E + R+Y FV + + +EA++N+N
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 215 GELVHGQGIKIEAA 256
++ + I++ A
Sbjct: 68 YSILCDRCIRVSPA 81
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 33.5 bits (73), Expect = 0.018
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNG 217
+F+ NLS K T ++ LF +YG V + + R FV EN Q R A + L+G
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSG 72
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 33.5 bits (73), Expect = 0.018
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 211
+F+ LS T ++D+ F +YG + +VRN Y FV E E+ + A +
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 212 NGELVHGQGIKIEAAKSR 265
G +++G+ I ++ + R
Sbjct: 162 AGLMLNGRRIVVDVERGR 179
Score = 32.7 bits (71), Expect = 0.032
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Frame = +2
Query: 281 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNEA 436
P +F+ L+ T+ ++ F ++G + +VRN Y FV + D+ A
Sbjct: 98 PYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVA 157
Query: 437 IKELNGLMVDGQPMKVQL 490
K GLM++G+ + V +
Sbjct: 158 YKASAGLMLNGRRIVVDV 175
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 32.7 bits (71), Expect = 0.032
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 293 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--GFVHL 409
+F+G +T R P +R +F++FG+V + NY GF+ +
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKM 448
Score = 29.1 bits (62), Expect = 0.39
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNY--GFVHMENEQVGREA 199
+F+G ++ + LR +FE++G+V + NY GF+ M +A
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKA 457
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 30.7 bits (66), Expect = 0.13
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTV 130
+FVGNL +TTDADL+ F + G +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQI 254
Score = 25.8 bits (54), Expect = 3.6
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +2
Query: 248 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 367
+ A + + P++ +FVGNL +T +++E F + G +
Sbjct: 215 KTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQI 254
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 30.7 bits (66), Expect = 0.13
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Frame = +2
Query: 281 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN------YGF--VHLDATGDVNE- 433
P T++FV N++ + ++R F+ FG V + D+ N G + D ++
Sbjct: 92 PPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVA 151
Query: 434 ------AIKELNGLMVDGQPMKVQL 490
A+++ NGL G+P+ V L
Sbjct: 152 AHSAKIAVQQANGLRFSGKPLSVVL 176
Score = 27.9 bits (59), Expect = 0.90
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 53 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN 154
++FV N+S T LR F+ +G V + D+ N
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 30.3 bits (65), Expect = 0.17
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 299 VGNLTDKTRAPEVRELFQKFGTV 367
V NL+D TR E+R+LF++FG +
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGI 228
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 29.9 bits (64), Expect = 0.22
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRP----LFEKYGTVVE-----CDIVRNYGFVHMENEQVGREAIQN 208
++V NL+DK DLR LF YGTVV+ +R V + A++
Sbjct: 6 LYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMKA 65
Query: 209 LNGELVHGQGIKIEAAKSR 265
L + G+ +KI+ A S+
Sbjct: 66 LKNFIFFGKEMKIQYAHSK 84
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 29.1 bits (62), Expect = 0.39
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Frame = +2
Query: 56 IFVGNLSDK--TTDADLRPLFEKYGTVVE----C----DIVRNYGFVHMENEQVGREAIQ 205
++V NL D T + L LF +G+++ C I + YGFV + A
Sbjct: 384 LYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKD 443
Query: 206 NLNGELVHGQGIKIEAAKSRKAPSTPTTKIFVGN--LTDKTRAPEVRELFQK 355
LNG +V + I + A+ RK+ + F N +++T + + LF K
Sbjct: 444 TLNGMMVGKKRIFVCFAE-RKSDRIRRLQAFFANKPTSEQTAQQDNKALFVK 494
Score = 26.6 bits (56), Expect = 2.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTV 130
I+VGN+ + +D ++ F KYG V
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQV 43
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 29.1 bits (62), Expect = 0.39
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = +2
Query: 287 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG----FVHLDATGDVNEAIKELNG 454
T + + NL T + +V FG ++ C + + G V + +++L+G
Sbjct: 100 TNVVIENLAPGTSSDDVAATLLNFGEILNCQVNDSQGKVRASVRFSTLASAQQVVQKLDG 159
Query: 455 LMVDG 469
+ DG
Sbjct: 160 VTADG 164
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 28.7 bits (61), Expect = 0.51
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN------YGFVHME-NEQVGREAIQNLN 214
+FVGNL+ + + L F G++ IVR+ GF +++ + +G + LN
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 215 -GELVHGQGIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVV 370
++ G+ ++I AKS K S +K G+ +T R+L K G +
Sbjct: 332 EKKMPEGRTLRIMRAKSTKPKSITRSK--RGDEKTRTLQGRARKLIGKAGNAL 382
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 27.9 bits (59), Expect = 0.90
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 437 WPRSRHPSRPNVRSHSYARYRTRPPSRTS 351
W + HP+ P+ ++ S ARY T SR S
Sbjct: 113 WNQPSHPTHPSPQNWSQARYPTYSRSRRS 141
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 27.5 bits (58), Expect = 1.2
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Frame = +2
Query: 155 YGFVHMENEQVGREAIQNLNGELVHGQGIKIE--------AAKSRKAPSTPT--TKIFVG 304
+GFV +++ A+ +NG ++ G ++I+ AA+ RK S+ TKI +
Sbjct: 667 FGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTKILIK 726
Query: 305 NLTDKTRAPEVRELFQKFG 361
NL + +V+ L +G
Sbjct: 727 NLPFEATKKDVQSLLGAYG 745
Score = 27.1 bits (57), Expect = 1.6
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
Frame = +2
Query: 275 STPTTKIFVGNLTDKTRAPEVRELFQKF----GTVVECD---------IVRNYGFVHLDA 415
S T I+V NL T+ E +++F+ V+ + +GFV
Sbjct: 615 SLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKD 674
Query: 416 TGDVNEAIKELNGLMVDGQPMKVQLS 493
A+ +NG ++DG ++++LS
Sbjct: 675 KASAVAAMHAMNGFVLDGHKLEIKLS 700
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Frame = +2
Query: 266 KAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV--------VECDIVRNYGFVHLDATG 421
++P P I V NLT + E+F +G + + ++ + Y ++
Sbjct: 92 RSPEEPLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHD 151
Query: 422 DVNEAIKELNGLMVDGQPMKVQL 490
A+ ++N +DG+ + V +
Sbjct: 152 QAANAVDKMNNAELDGEELFVSI 174
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 211
+FVGN+ ++ + +F + G V +V + YGF + + A++ L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 212 NGELVHGQGIKIE 250
N + + I++E
Sbjct: 69 NNSELGPRKIRVE 81
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTV 130
++VGNLS TT+ + LF K G +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEI 58
>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 180
Score = 26.2 bits (55), Expect = 2.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 20 VETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECD 142
++ +M G K + ++ TD +LRP+ EK+ V++ D
Sbjct: 11 IDCEMTGLEVGKHVLMEVAAIITDGNLRPVEEKFDAVIKLD 51
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 2.7
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +2
Query: 290 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 385
+I+VG L+ + ++ F +FG+V +I+
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEII 37
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.8 bits (54), Expect = 3.6
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 197 AIQNLNGELVHGQGIK--IEAAKSRKAPSTPTTKIFVGNLTDKTRA 328
A+QN+NG + QG + A+K+ APS + L K +A
Sbjct: 218 AVQNVNGTIKESQGTESISFASKNNSAPSADANNGNMTKLVSKEKA 263
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 3.6
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQ 205
+FV N+ +T+D L+ +G V + R G ++ + V E +Q
Sbjct: 317 VFVKNIPPETSDVSLKSAMSIFGPVKAIEFARRKGTAYV--DFVNHECVQ 364
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.8 bits (54), Expect = 3.6
Identities = 15/64 (23%), Positives = 24/64 (37%)
Frame = +2
Query: 104 PLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHGQGIKIEAAKSRKAPSTP 283
P F Y + D V ++ + G I NG +H + E K ++
Sbjct: 45 PTFSPYAVIKNFDEVNRMYYIQVVGNLSGVITIVGGNGSHIHAASVYSETYALGKLVTSN 104
Query: 284 TTKI 295
TTK+
Sbjct: 105 TTKL 108
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 366 TVPNFWNSSRTSGARVLSVRLPTN 295
T+P W SS++S ++ S LPT+
Sbjct: 107 TIPKRWRSSKSSSSQCSSPFLPTS 130
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 4.8
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 497 SSTAAPSWVARPPSGHSTL*WPRSRHPSRPNVRSHSYARYRTRPPSRTS-GTARGPPARA 321
S++AAP PP+ S L P S P RP++ S A P ++ PPA+
Sbjct: 119 SASAAPPSAPAPPTPQSELRPPTSA-PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
Query: 320 SCPL 309
+ P+
Sbjct: 178 AAPV 181
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 25.4 bits (53), Expect = 4.8
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Frame = +2
Query: 56 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 211
++VGN+ + + + +F++ G V +V + YGF + A++NL
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 212 N 214
N
Sbjct: 67 N 67
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 25.0 bits (52), Expect = 6.3
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = +2
Query: 161 FVHMENEQVGREAIQNLNGELVHGQGIKIE 250
F+H +N + +E ++ + E H QG+ +
Sbjct: 236 FLHNKNTGLDKETLKAIENEFYHPQGVSTQ 265
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.0 bits (52), Expect = 6.3
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 203 QNLNGELVHGQGIKIEAAKSRKAPSTPTTK 292
QNL LV GQ IK K + S TTK
Sbjct: 17 QNLTDGLVGGQRIKAPNKKKNRKASKNTTK 46
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 293 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 391
I++GNL ++ +F +FG V+ ++VR+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRD 65
>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 8.4
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 17 DVETKMPGAGTFKIFVGNLSDK--TTDADLRPLFEKYGTV-VECDIVRNY 157
D+ T + F I++GN SDK T DL P + + + + I++ Y
Sbjct: 6 DISTVVVQIDEFGIYIGNASDKEPTWKVDLVPYKQSWVPISIVTTIIQRY 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,882,921
Number of Sequences: 5004
Number of extensions: 35559
Number of successful extensions: 235
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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