Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_B19
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    27   0.93 
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1...    25   2.1  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    25   2.8  
SPCC1442.15c |cox18||mitochondrial inner membrane protein Cox18|...    25   2.8  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   2.8  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    24   5.0  

>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 228 CLWSLLFFYNTCIANG 181
           CLWS++F +   IANG
Sbjct: 128 CLWSMIFHFIIAIANG 143


>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 133 NYIDILQNKYINQFNYLFT*HRLIRKSDLKGLSVFYL 23
           N ++ LQ KY    + L+T  R+I+   L   S ++L
Sbjct: 157 NLLETLQEKYFGVEDVLYTSKRIIKSLKLSDRSDYFL 193


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 160 IMQYSFIDHNYIDILQNKYINQFN 89
           I++YSFI   ++ I+Q   I+ FN
Sbjct: 235 ILRYSFISEKFLHIVQFLRISSFN 258


>SPCC1442.15c |cox18||mitochondrial inner membrane protein
           Cox18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 202

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 62  KKK*FKRFICILLIVYILP 6
           +KK +KRF C  L++Y LP
Sbjct: 68  RKKLYKRFNCHPLMIYALP 86


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 196 SIIKK*QRP*TKFNYYTHLQSLAPDCFSNVT 288
           S+ K   +P   F +Y  +  L  DCF+N +
Sbjct: 487 SLYKNVDQPQLLFQFYQSIMDLNNDCFTNTS 517


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 175 TEPLSIMQYSFIDHNYIDILQNKYINQ 95
           T    I+ YS++D+ YI   Q   +NQ
Sbjct: 453 THEARIINYSYVDNLYILSFQQSVLNQ 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,079,270
Number of Sequences: 5004
Number of extensions: 16081
Number of successful extensions: 32
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)