Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_B18
         (448 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y12029-1|CAA72760.1|   89|Homo sapiens immunoglobulin heavy chai...    30   3.1  
AJ347558-1|CAC79011.1|   83|Homo sapiens immunoglobulin kappa ch...    29   7.2  
AB063957-1|BAC01585.1|  114|Homo sapiens immunoglobulin kappa li...    29   9.5  

>Y12029-1|CAA72760.1|   89|Homo sapiens immunoglobulin heavy chain
           protein.
          Length = 89

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 97  TSLRPSSAKSLHTCLLSS*SNEKRSFYYLRGRCS*FFYRY--EVW 225
           T  R +S  +LH  L S   ++   FY  RG  S FFY Y  EVW
Sbjct: 45  TISRDNSKNTLHLHLNSLRPDDTAVFYCARGESSSFFYFYGMEVW 89


>AJ347558-1|CAC79011.1|   83|Homo sapiens immunoglobulin kappa chain
           variable region protein.
          Length = 83

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 185 EADVPDFFIGTRYGDPFPITFANTNMPQEAL-YCQ 286
           E+ VPD F G+R G  F +T ++      A+ YCQ
Sbjct: 40  ESGVPDRFSGSRSGTDFTVTISSLQAEDVAVYYCQ 74


>AB063957-1|BAC01585.1|  114|Homo sapiens immunoglobulin kappa light
           chain VLJ region protein.
          Length = 114

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 185 EADVPDFFIGTRYGDPFPITFANTNMPQEAL-YCQ 286
           E+ VPD F G+  G  FP+T ++      A+ YCQ
Sbjct: 61  ESGVPDRFSGSGSGTHFPLTISSLQAEDVAVYYCQ 95


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,803,432
Number of Sequences: 237096
Number of extensions: 1385606
Number of successful extensions: 3962
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3962
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3644351872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)