Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_B18
         (448 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    23   2.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.1  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 235 KRITIPRTDKKIRNICLLNSKKN 167
           K++TI    K I+N+  + SKKN
Sbjct: 25  KKMTIEEAKKTIKNLRKVCSKKN 47


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 47  PNRQYEKETTPMGP 6
           P R YE+  TP  P
Sbjct: 243 PERHYERRATPPQP 256


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 338 FPGNEWSAVN 367
           FP N W A+N
Sbjct: 306 FPSNSWVAIN 315


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 338 FPGNEWSAVN 367
           FP N W A+N
Sbjct: 274 FPSNSWVAIN 283


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = +3

Query: 105 PSVLCEIFTHLSFIIVVKRETFFLLFKRQMFLIFLSVRGMVI 230
           P   C    HL ++I     +F+L     +F  +   R  VI
Sbjct: 194 PEDKCPFTEHLGYLIFSSTISFYLPLFVMVFTYYKIYRAAVI 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,021
Number of Sequences: 438
Number of extensions: 3332
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)