Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_B16
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    26   3.0  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    25   5.2  
SPCC757.10 |vph2||endoplasmic reticulum membrane involved in ass...    25   6.8  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    25   9.0  

>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 207 LVSAQDTTRVGKIIMPVSEASSSQYTLPVI 296
           L+SA     VG IIM  S++++++YT   I
Sbjct: 356 LISASTVVAVGYIIMLASDSNAAKYTATYI 385


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
 Frame = +3

Query: 102 AQNKLQ--VSTLTQCYKTQITELEAKYKREIDSLKMQLVSAQDTTRVGKIIMPVSEASSS 275
           AQ ++Q   S++T+ +K  I+    +Y+  I +   + V  ++  R    ++ +S+    
Sbjct: 237 AQRQIQQYASSVTELFKLAISGKAKEYEDRIRNAG-KFVFGENMDRNSSGLL-LSDELLD 294

Query: 276 QYTLPVIPKDDS 311
           QY++  IPKD+S
Sbjct: 295 QYSISNIPKDES 306


>SPCC757.10 |vph2||endoplasmic reticulum membrane involved in
           assembly of the V-ATPase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 361 VRALSQHPVLRHPNHTRQV 417
           VR LS  PV    NHTRQ+
Sbjct: 135 VRYLSAQPVRTSKNHTRQI 153


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 21/92 (22%), Positives = 41/92 (44%)
 Frame = +3

Query: 78  AQQLESERAQNKLQVSTLTQCYKTQITELEAKYKREIDSLKMQLVSAQDTTRVGKIIMPV 257
           +Q++E E  + K     + Q    Q  + E+K K E    K+    +++     + I PV
Sbjct: 140 SQKVEIETVETKPGEPEVKQETNLQKEKKESKVKLESKEEKI----SRNLRSSSRSISPV 195

Query: 258 SEASSSQYTLPVIPKDDSSDGEMDINVSMIPR 353
           +E   S    PVIP+      + + ++++  R
Sbjct: 196 TEQPQSPKIQPVIPEKKEKSEKKESSMTLRKR 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,839,650
Number of Sequences: 5004
Number of extensions: 32532
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)