Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_B16
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0121 - 25762247-25762876,25762961-25763134,25763899-25764186     31   0.56 
07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,853...    28   5.2  
05_07_0234 - 28566846-28567766                                         28   5.2  
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775     27   6.9  
12_02_0346 - 17776871-17781445                                         27   6.9  
01_06_0836 - 32321431-32321556,32321656-32321872,32321975-323235...    27   6.9  
01_05_0407 - 21883009-21883950                                         27   6.9  

>05_06_0121 - 25762247-25762876,25762961-25763134,25763899-25764186
          Length = 363

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 18/69 (26%), Positives = 34/69 (49%)
 Frame = +3

Query: 147 TQITELEAKYKREIDSLKMQLVSAQDTTRVGKIIMPVSEASSSQYTLPVIPKDDSSDGEM 326
           T +  L+A  + +  S  +++ S++ +    +I++ +        TLPV+ +   SDG  
Sbjct: 125 TTLQRLQALMRLQASSRAIKMASSRKSVEQERIVVQMQGGRVKTLTLPVVHRRRVSDGG- 183

Query: 327 DINVSMIPR 353
           DIN    PR
Sbjct: 184 DINFDRSPR 192


>07_01_1006 +
           8528508-8529285,8529376-8529544,8530179-8530445,
           8530533-8530878,8530964-8531101,8531197-8531322,
           8531422-8531634,8531721-8531863,8531891-8532009,
           8532099-8532295,8532379-8532729,8532811-8533395
          Length = 1143

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 420 LNLTCMVWMAEDWVLTQSPHPLP 352
           +++ C +W A  W+L Q P  LP
Sbjct: 370 ISVICEIWFAMSWILDQFPKWLP 392


>05_07_0234 - 28566846-28567766
          Length = 306

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 195 LKMQLVSAQDTTR-VGKIIMPVSEASSSQYTLPVIPKDDSSDGEMDINVSMIPR 353
           ++ ++   QD T  V   ++P +EASSS  T   + ++  SDGE +     + R
Sbjct: 1   MEERIPEPQDPTADVAADVLP-AEASSSDVTTTGVEEESDSDGEFEFEFPFVSR 53


>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
          Length = 1123

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +3

Query: 165 EAKYKREIDSLKMQLVSAQDTTRVGKIIMPVSEASSSQYTLPVIPKDDSSDGEM 326
           E      +++    ++S  D+T  GK++ P +  S+++  +    K+DSS+G +
Sbjct: 440 EISKTESVETASSVVISEDDSTVDGKLVEPTASVSATETEI----KEDSSEGSV 489


>12_02_0346 - 17776871-17781445
          Length = 1524

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 108  NKLQVSTLTQCYKTQITELEAKYKREIDSLKM-QLVSAQDTTRVGKIIMPVSEASSSQYT 284
            N L  + LT+  +  IT+        +D LKM   +     T  G I++PV   +  QY 
Sbjct: 1040 NMLDFNNLTELQEMNITKCPPI---SLDHLKMLTCLKTLQITDSGSILLPVDCENYVQYN 1096

Query: 285  LPV 293
            LPV
Sbjct: 1097 LPV 1099


>01_06_0836 -
           32321431-32321556,32321656-32321872,32321975-32323590,
           32323670-32323753,32323834-32324104,32324294-32324547,
           32324709-32324918,32325839-32326024
          Length = 987

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 90  ESERAQNKLQVSTLTQCYKTQITELEAKYKREIDSLKMQ 206
           E   A    Q   +TQ  + ++  L+ K K EIDSL+ Q
Sbjct: 462 EKREAIQAQQDLAITQADRDELLTLQMKLKEEIDSLRAQ 500


>01_05_0407 - 21883009-21883950
          Length = 313

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 483 LRHQVHLLLTICPKAPEIDRFLNLTCMVWMAEDWVLTQSPHPLPEVSS 340
           L H+ HLL  +   +P I     +T +V +     +T S  PLP  SS
Sbjct: 15  LNHERHLLRRLAVSSPTILHAAWVTALVAVCLALCITHSRKPLPSSSS 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,206,001
Number of Sequences: 37544
Number of extensions: 224537
Number of successful extensions: 649
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)