Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_B13
(519 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 157 9e-40
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 155 3e-39
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 32 0.059
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 31 0.078
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 29 0.32
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 27 2.2
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 2.2
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 26 3.9
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 25 5.1
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 25 5.1
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 6.8
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 25 6.8
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 25 9.0
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 9.0
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 157 bits (381), Expect = 9e-40
Identities = 79/128 (61%), Positives = 98/128 (76%), Gaps = 2/128 (1%)
Frame = +3
Query: 135 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 314
MS +E V AKLAEQAERY++M MK+V + +LS EERNLLSVAYKN++GARR+S
Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60
Query: 315 WRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLCLLDKHLIPKASNPESKV 488
WR+ISSIEQK E G+ R+ + KEYR K+E EL +IC+DVL +L+KHLIP A+ ESKV
Sbjct: 61 WRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKV 120
Query: 489 FYLKMTGD 512
FY KM GD
Sbjct: 121 FYYKMKGD 128
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 155 bits (377), Expect = 3e-39
Identities = 76/127 (59%), Positives = 96/127 (75%), Gaps = 2/127 (1%)
Frame = +3
Query: 138 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSW 317
+ +E+ V AKLAEQAERY+ M MK V T EL+ EERNLLSVAYKNV+GARR+SW
Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62
Query: 318 RVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLCLLDKHLIPKASNPESKVF 491
R++SSIEQK E G+ + ++ KEYR K+E+EL IC D+L +L+KHLIP A++ ESKVF
Sbjct: 63 RIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVF 122
Query: 492 YLKMTGD 512
Y KM GD
Sbjct: 123 YYKMKGD 129
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 31.9 bits (69), Expect = 0.059
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 2/130 (1%)
Frame = +3
Query: 129 STMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARR 308
S S EEL+ R + + Y+ MA + E E ++ + LLS Y N
Sbjct: 3004 SDSSAYGEELM-RERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDNEAYQAE 3062
Query: 309 SSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREIC--YDVLCLLDKHLIPKASNPES 482
+R+ + +E+ + EY +E+ L++ C Y+ C+ + L K ++
Sbjct: 3063 LFYRLSNCVEKVLHNKISITDLKTEYEEILEQTLKKECKAYERSCIENVKL--KKRTEQA 3120
Query: 483 KVFYLKMTGD 512
+Y + +
Sbjct: 3121 TAYYASSSSE 3130
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 31.5 bits (68), Expect = 0.078
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +3
Query: 138 SVDKEELVQRAKLAEQAERYDDMAAAMKEVT--ETGVELSNEERN-LLSVAYKNVVGARR 308
SV + ++ K ++ E + ++ + +K V+ ET E+SN+E N LL + YK V
Sbjct: 3 SVSNVSVNEQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREF 61
Query: 309 SSWRVIS 329
S+W S
Sbjct: 62 STWATFS 68
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 29.5 bits (63), Expect = 0.32
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = +3
Query: 144 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 323
+K+E QR + Q R D M + +G S+ + SV+ + +R S+
Sbjct: 320 EKQEKEQRLFMLAQKAREDRMG---RNAASSGP--SHAKPRSTSVSSEERSRSRAGSFSH 374
Query: 324 ISSIEQKTEGSE---RKQQMAKEYRVKVEKELR 413
S E + E SE R+Q++ +E R + EK+LR
Sbjct: 375 HSESENEDEDSEAFRRRQELRRERRRQAEKDLR 407
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 285 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 401
KN+ S+ R +SS + K +E + M +Y K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 458 YKVLVQ*TQDIIADFSELLFYFNPIFFCHLL 366
+ L Q ++++I +EL F+ F CHLL
Sbjct: 1755 FHALSQPSRELICKMTELNFFAADFFLCHLL 1785
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 273 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKE 407
S +Y + G S W+ I ++ K+ G +R ++ Y +KE
Sbjct: 61 SFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYYSERYHSFRDKE 105
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 5.1
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
Frame = +3
Query: 144 DKEELVQRAKLAEQA-ERYDDMAAAMK--EVTETGVELSNEERNLLSVAYKNVVGARRSS 314
D ++RA A QA E+ + + +K E+ +L LL V + + R S
Sbjct: 265 DVRSRIERA--ARQAREKNEKLLQNVKTSEIPINAADLEGINPELLPVIEEEIRSFRDQS 322
Query: 315 WRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLCLLDKHLIPK 464
+K + + KEY K +++LR+ D+ LL KH I +
Sbjct: 323 ---AMKKREKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 429 VLCLLDKHLIPKASN-PESKVFYLKMTGD 512
VL L+ L+ A+ PE K+FY K TGD
Sbjct: 509 VLMQLESFLLNIANPAPEGKLFYEKQTGD 537
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.0 bits (52), Expect = 6.8
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Frame = +3
Query: 147 KEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVG-ARRSSWRV 323
KE L +L E + D + A + V NLL + YKNV A +
Sbjct: 608 KEHLYSFLQLVEPSFAKSDSSNATESQISESVRKGISIFNLLFIVYKNVCSQAGINPSTK 667
Query: 324 ISSIEQKTEGSE------RKQQMAKEYRVKVEKELREICYDVLCLLDKHLI 458
+ +++ T E + Q +EY+ K E ELR + LL+ LI
Sbjct: 668 LEDLDEHTLSDELTYITKKFVQKDQEYQTK-EIELRNYKITLQSLLEDKLI 717
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 262 ETFFPLLIKMWSAPDGHHGESFPLLNRKP 348
E F P L++ +A D +GE+ LL R+P
Sbjct: 104 EVFLPQLLRYPNASDPLNGEAAALLLREP 132
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 24.6 bits (51), Expect = 9.0
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = -2
Query: 512 ISRHFEVKYFTFWITSFRYKVL 447
I+ F + YF +W+ SF + ++
Sbjct: 194 ITSDFLISYFVYWVISFPFHLI 215
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 426 DVLCLLDKHLIPKASNPESKVFY 494
DV+C + L+P PE K+FY
Sbjct: 178 DVICGKEAFLLPLNEYPEYKLFY 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,088
Number of Sequences: 5004
Number of extensions: 41404
Number of successful extensions: 127
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -