Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_B12
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0145 + 14833043-14833113,14833544-14833662,14833834-148339... 30 1.1
01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970... 29 2.6
10_08_0209 + 15869966-15870024,15870050-15870138,15870963-15872359 28 3.4
04_04_0477 + 25517060-25517152,25517263-25517382,25518203-255185... 28 3.4
01_06_0058 - 26056334-26056630,26057063-26057365,26057748-260578... 28 4.5
06_03_0930 - 26038341-26038508,26039114-26039254,26040799-260408... 27 6.0
02_05_0653 + 30654615-30654666,30655478-30655515,30655879-306559... 27 6.0
01_06_0622 + 30669015-30669279,30669467-30670419 27 7.9
>03_03_0145 +
14833043-14833113,14833544-14833662,14833834-14833991,
14834147-14834587
Length = 262
Score = 29.9 bits (64), Expect = 1.1
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +2
Query: 236 DTTMRLESLPSLAKGV-EDNSRYKTLEANVTMLKLLVDDKDGVSRSEVFDMLHSRDDNPE 412
DTT L L S K + ++NS + VTM + + D++G RSE+ D+ +
Sbjct: 88 DTTRILRDLLSQVKSLRQENSTLQNESNYVTMERNELQDENGALRSEISDL--QNELRMR 145
Query: 413 HEDLPTFPEDAEDAKADVPASP 478
P + A + VP SP
Sbjct: 146 ATGSPGWGHGATGSPLPVPPSP 167
>01_01_1206 -
9702128-9702184,9702272-9702323,9702410-9702471,
9702578-9702665,9703027-9703095,9703224-9703281,
9703895-9703996,9704075-9704179,9704273-9704624,
9706005-9706100,9706427-9706501,9707192-9707370,
9707501-9707740,9707922-9708017,9708193-9708306,
9708428-9708527
Length = 614
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +2
Query: 392 SRDDNPEHE---DLPTFPEDAEDAKADVPASPD 481
S+DD EHE D+P E+ + ++DVP S +
Sbjct: 332 SKDDKNEHEAEHDMPEHSEETHEDESDVPESAE 364
Score = 27.9 bits (59), Expect = 4.5
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +2
Query: 224 QTSPDTTMRLESLPSLAKGVEDNSRYKTLEANVTMLKLLVDDKDGVSRSEV-FDMLHSRD 400
+TS T ES P+ ++G+ + + + T K+ KD + E DM +
Sbjct: 291 ETSAAPTKEQESTPADSEGLSREELGRLVASRWTGEKVDEVSKDDKNEHEAEHDMPEHSE 350
Query: 401 DNPEHEDLPTFPEDAEDAKA 460
+ HED PE AED+ A
Sbjct: 351 ET--HEDESDVPESAEDSYA 368
>10_08_0209 + 15869966-15870024,15870050-15870138,15870963-15872359
Length = 514
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 314 ANVTMLKLLVDDKDGVSRSEVFDMLHSRDDNPEHEDLPTFPEDAEDAKADVPA 472
AN+ ML++ D+ S+ D H R NPEH FP A++ VPA
Sbjct: 46 ANLGMLRM-TSDQQRCHISKAPD--HIRSSNPEHYKPLAFPVGPYHARSGVPA 95
>04_04_0477 +
25517060-25517152,25517263-25517382,25518203-25518506,
25518944-25519305,25519401-25519575,25520510-25520574,
25520725-25520790,25521275-25521350,25521813-25521922
Length = 456
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 398 DDNPEHEDLPTFPEDAEDAKADVPASP 478
DD+P E P+FP + D+K D P P
Sbjct: 243 DDSPSEELTPSFP-SSTDSKQDAPLGP 268
>01_06_0058 -
26056334-26056630,26057063-26057365,26057748-26057891,
26057947-26058702,26058844-26059088,26059177-26060079,
26060163-26060225,26060537-26061025,26061211-26061291,
26061801-26061956,26062371-26062416
Length = 1160
Score = 27.9 bits (59), Expect = 4.5
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Frame = +2
Query: 206 LKSCRGQTSPDTTMRLESLPSLAKGVEDNSRYKTLEANVTMLKLLVDD-----KDGV--- 361
+K + +T P+ S AK DN+RY + T L + +D GV
Sbjct: 347 IKLVQNETPPELMRLWTSSDPDAKHFRDNNRYFNGHFSFTTLGVSLDKAFANMSSGVYTF 406
Query: 362 -SRSEVFDMLHS---RDDNPEHEDLPTFPED 442
+ +++ +HS RD PEH +L + +D
Sbjct: 407 RAHGQIYHNIHSFSPRDSGPEHLELYFYDDD 437
>06_03_0930 -
26038341-26038508,26039114-26039254,26040799-26040858,
26040972-26041034,26041444-26041454,26041722-26041802,
26042783-26043020,26043563-26043997
Length = 398
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Frame = -3
Query: 434 GRWV--NLHVPGCRPGNEAYRTLPIC 363
GRWV L +P +P AYR PIC
Sbjct: 167 GRWVPVRLPLPSLQPRAAAYRFCPIC 192
>02_05_0653 +
30654615-30654666,30655478-30655515,30655879-30655973,
30656350-30656484,30656786-30656912,30657907-30657921
Length = 153
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 353 DGVSRSEVFDMLHSRDDNPEHED 421
DG++ E+ +MLH+ D+ EH+D
Sbjct: 81 DGLTSDELDEMLHAYADHTEHKD 103
>01_06_0622 + 30669015-30669279,30669467-30670419
Length = 405
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 320 RSPPRFCIGYCLQPPLQDSVNSQVALSYL 234
R+PP CIG ++P +DS L++L
Sbjct: 174 RTPPLHCIGPLIKPREEDSTERHECLAWL 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,067,501
Number of Sequences: 37544
Number of extensions: 272018
Number of successful extensions: 702
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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