Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_B08
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   3.0  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    24   9.3  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.3  

>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = -1

Query: 144 DKTSENKTRLRP*QRLASQSGRFHNSVTNI-----IIRNNNFQYRFDSTVTS 4
           DK+S+ +TRL+  Q   S    F NS  N      I+  NN  +   S +++
Sbjct: 96  DKSSQRRTRLKQIQEFISHRRSFLNSNANSVESEKILAENNHMFNVKSKLSN 147


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 282 NNFRIFLLINSIYEPCL 232
           N++ I LLI  +Y+PCL
Sbjct: 927 NHWAISLLIFQLYDPCL 943


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 312 DSVSIGLGYPNNFRIFLLI 256
           +S SIGL  PN F I++ I
Sbjct: 65  NSSSIGLSNPNKFSIYIYI 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,420,561
Number of Sequences: 5004
Number of extensions: 25175
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)