Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_B08
         (381 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234...    28   2.9  
10_08_0506 + 18390892-18391373,18392699-18392798,18393152-183934...    27   5.0  
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851...    26   8.7  

>10_08_0509 + 18419815-18422150,18422249-18422291,18423154-18423487,
            18423766-18423878,18424461-18424589,18424771-18424864,
            18424967-18425050,18425859-18426047,18426897-18427017,
            18427476-18427692
          Length = 1219

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 168  NSVYLCKCFSKMLKGIIFQSSTNKVHK*NLSAKI 269
            ++  L KC  K+L+  IF S  NK H  N+S K+
Sbjct: 963  SAALLLKCL-KILENAIFLSDDNKTHLLNMSRKL 995


>10_08_0506 +
           18390892-18391373,18392699-18392798,18393152-18393485,
           18393756-18393868,18394437-18394565,18394746-18394839,
           18394942-18395025,18395265-18395896,18396662-18396951,
           18397098-18397242,18397876-18397973,18398075-18398156,
           18398607-18398612,18398845-18398928
          Length = 890

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 168 NSVYLCKCFSKMLKGIIFQSSTNKVHK*NLSAKIF 272
           ++  L KC  K+L+   F S  NK H  N+S K++
Sbjct: 364 SAALLLKCL-KILENATFLSDDNKTHLLNMSRKLY 397


>04_04_1690 - 35382241-35382553,35382614-35382933,35383601-35385164,
            35385254-35385372,35385701-35385811,35386068-35386595,
            35386702-35386881,35386957-35387556,35387646-35388066,
            35388183-35388280,35388372-35389260,35389366-35389544,
            35389647-35389763,35389862-35389952,35390578-35390753
          Length = 1901

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 116  YAHSNGSHHNLDVSTIQSLTLLYEIIIFNIDL 21
            ++HS  S   L   T +   LLY++  +N+DL
Sbjct: 1597 FSHSGTSFAALSTDTTRREVLLYDVQTYNLDL 1628


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,961,604
Number of Sequences: 37544
Number of extensions: 121900
Number of successful extensions: 214
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)