Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_B06
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...   204   5e-54
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    29   0.32 
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    29   0.42 
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    26   3.9  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   3.9  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    25   5.1  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   6.8  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   6.8  
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    25   6.8  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   9.0  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   9.0  

>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score =  204 bits (499), Expect = 5e-54
 Identities = 92/172 (53%), Positives = 123/172 (71%), Gaps = 2/172 (1%)
 Frame = +3

Query: 9   FGRTSTNEQTEIAQRLFLKLRDNGFISSQSVDQLLCTNCDRFLADRFVEGTCPFPGCGYE 188
           FGRT+T +QT IAQ +F KL +N +++  ++ QL C     +LADR+VEGTCP   CGY+
Sbjct: 312 FGRTTTPKQTGIAQHIFTKLYNNDYMAIDTMTQLYCEVHQGYLADRYVEGTCP--KCGYD 369

Query: 189 DARGDQCDKCGKLINAIELIRPRCKVCGHSPTVKPSEQLFLELGQLEPSIRTWI--STVE 362
           DARGDQCD CG L+NA ELI P+CK+   +P  + ++ +FL L +L+P++ +W   S VE
Sbjct: 370 DARGDQCDGCGGLLNAFELIDPKCKLDRATPVKRETKHVFLSLDKLQPAVESWAMQSAVE 429

Query: 363 GGWSPPARAVTRAWLREQLRPRAVTRDLKWGVPVPLPEYSNKVFYVWFDAPI 518
           G WS   R++T +WL+E LRPR +TRDLKWG PVPL E+  KV YVWFDA I
Sbjct: 430 GKWSNNGRSITESWLKEGLRPRCITRDLKWGTPVPLEEFKGKVLYVWFDATI 481


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 444 LKWGVPVPLPEYSNKVFYVWFDAPI 518
           L WG+PVP    S +  YVW DA I
Sbjct: 237 LSWGIPVP--GNSQQTIYVWLDALI 259


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -3

Query: 169 KGQVPSTNLSAKNLSQLVHNNWSTDWELMNPLSLSFKNNRCAISVCSLVLVRP-KP 5
           KG + + N++A N   L      T W L+N  S+   +NR  ++  +L+++ P KP
Sbjct: 3   KGSLLNRNINALNCRCLAQK--LTSWGLLNIRSIHADSNRGVVNSSNLIIIPPYKP 56


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +3

Query: 333 SIRTWISTVEGGWSPPARAVTRAWLREQLRPRAVTRDLKWGVPVPLPEYSNKVFYV 500
           +IR+W   +    SPP  +++ + L +Q +           +  PLP    KVF+V
Sbjct: 472 NIRSWTKLIS---SPPKSSISSSILTQQRQFHTFRPSFHSEIKKPLPGTGIKVFFV 524


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 384 RAVTRAWLREQLRPRAVT 437
           RA  R+W+ E LRP A+T
Sbjct: 389 RAAGRSWILEALRPGAIT 406


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 63  KLRDNGFISSQSVDQLLCTNCDRFL 137
           K+R +  I+SQS+ Q+  + C RFL
Sbjct: 198 KIRSSHRITSQSIKQIRLSFCKRFL 222


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 154 STNLSAKNLSQLVHNNWSTDWELMNPLSLSFKNNRCAISVCSLVL 20
           S+ +S+  L   + + W+ DW +MN        +RC  +   L+L
Sbjct: 176 SSTVSSLELVSQIASIWAFDWPMMNLQETFIYWDRCTNACLRLLL 220


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 373 DHPPSTVEIHVLIDGSNWPSSRNSCSLGL 287
           D  PSTV++H+   G N P+     +L L
Sbjct: 338 DTEPSTVDMHIAFTGLNKPTIERERNLKL 366


>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 216 CGK--LINAIELIRPRCKVCGHSPTVKPSEQLFLELGQ 323
           CG   L N  E+I+ R ++ G    + PS++++  +GQ
Sbjct: 35  CGAVTLTNPFEVIKTRFQLQGQLTKLDPSKRIYKSVGQ 72


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 405 LREQLRPRAVTRDLKWGVPVP 467
           +R+  RPR + R+L W +  P
Sbjct: 101 IRQDNRPRLIIRNLPWSIKKP 121


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 429 AVTRDLKWGVPVPLPEYSNKVFYVWFD 509
           A  R+   GVP+   E ++ V+Y +FD
Sbjct: 39  ATVRETLLGVPISEKEIADTVWYYYFD 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,085,798
Number of Sequences: 5004
Number of extensions: 41388
Number of successful extensions: 138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)