Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_B06
(519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0207 - 17927753-17927983,17928077-17928178,17928273-179285... 214 3e-56
10_07_0110 + 12977702-12977958,12978374-12978527,12978661-129787... 208 2e-54
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569... 41 7e-04
08_02_0352 + 16146025-16146642 31 0.42
11_01_0679 - 5550070-5550201,5550309-5550454,5550577-5551219 29 2.2
01_06_0622 + 30669015-30669279,30669467-30670419 29 2.2
03_01_0248 - 1932992-1933423,1933440-1933489,1933558-1933606,193... 29 3.0
12_02_0918 - 24299620-24299748,24299890-24300037,24303105-243032... 28 3.9
11_04_0365 - 16818468-16818514,16818619-16821706,16822860-168229... 28 3.9
09_04_0284 + 16384553-16384755,16384884-16385199,16385889-163859... 28 5.2
06_02_0062 - 11047883-11048032,11048337-11048459,11048625-110487... 28 5.2
01_07_0082 - 40965947-40967023 28 5.2
01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667 28 5.2
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473... 27 6.8
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653... 27 6.8
11_06_0673 - 26114861-26115003,26115141-26115290,26115372-261155... 27 9.0
03_02_1002 + 13124398-13124994,13125116-13125346,13125993-131262... 27 9.0
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615... 27 9.0
02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722 27 9.0
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650... 27 9.0
>06_03_0207 -
17927753-17927983,17928077-17928178,17928273-17928502,
17929257-17929343,17931263-17931389,17931485-17931628,
17931920-17931985,17932136-17932254,17932437-17932551,
17932626-17932732,17932969-17932983,17933810-17933900,
17934528-17934671,17934750-17934980,17935093-17935248,
17935330-17935483,17935973-17936117,17936241-17936355
Length = 792
Score = 214 bits (523), Expect = 3e-56
Identities = 95/172 (55%), Positives = 122/172 (70%), Gaps = 2/172 (1%)
Frame = +3
Query: 9 FGRTSTNEQTEIAQRLFLKLRDNGFISSQSVDQLLCTNCDRFLADRFVEGTCPFPGCGYE 188
FGRTS+ +QTE+ Q +F KL +N +++ ++ QL C C RFLADR VEG CP GC YE
Sbjct: 106 FGRTSSPQQTEVCQAIFQKLMENNWLTENTMQQLYCDTCQRFLADRLVEGKCPTEGCNYE 165
Query: 189 DARGDQCDKCGKLINAIELIRPRCKVCGHSPTVKPSEQLFLELGQLEPSIRTWI--STVE 362
ARGDQC+ C KL+N ELI P+CKVC ++P V+ ++ LFLEL L + +I ++V
Sbjct: 166 AARGDQCENCSKLLNPTELIDPKCKVCKNTPRVRDTDHLFLELPLLSDKLVNYINETSVA 225
Query: 363 GGWSPPARAVTRAWLREQLRPRAVTRDLKWGVPVPLPEYSNKVFYVWFDAPI 518
G WS A T AWL+E L+PR +TRDLKWGVPVP +Y +KVFYVWFDAPI
Sbjct: 226 GMWSQNAIQATNAWLKEGLKPRCITRDLKWGVPVPHEKYKDKVFYVWFDAPI 277
>10_07_0110 +
12977702-12977958,12978374-12978527,12978661-12978798,
12978903-12979133,12979228-12979371,12979516-12979606,
12979798-12979868,12980014-12980128,12980313-12980431,
12980539-12980604,12980701-12980829,12980919-12981062,
12981522-12981704
Length = 613
Score = 208 bits (508), Expect = 2e-54
Identities = 95/172 (55%), Positives = 122/172 (70%), Gaps = 2/172 (1%)
Frame = +3
Query: 9 FGRTSTNEQTEIAQRLFLKLRDNGFISSQSVDQLLCTNCDRFLADRFVEGTCPFPGCGYE 188
FGRTS+ +QTE+ Q +FLKL DN ++S ++ QL C +C RFLADR VEG CP GC Y+
Sbjct: 105 FGRTSSPQQTEVCQDIFLKLLDNNWLSENTMQQLYCNSCQRFLADRLVEGYCPTEGCNYD 164
Query: 189 DARGDQCDKCGKLINAIELIRPRCKVCGHSPTVKPSEQLFLELGQLEPSIRTWI--STVE 362
ARGDQC+KCGKL+N+ EL VCG +P V+ ++ LFLEL L + +I +++
Sbjct: 165 SARGDQCEKCGKLLNSTEL------VCGSTPCVRDTDHLFLELPLLREKLEKYIDETSLT 218
Query: 363 GGWSPPARAVTRAWLREQLRPRAVTRDLKWGVPVPLPEYSNKVFYVWFDAPI 518
G WS A T AWL+E L+PR +TRDLKWGVPVP +Y +KVFYVWFDAPI
Sbjct: 219 GSWSQNAIHATNAWLKEGLKPRCITRDLKWGVPVPHEKYKDKVFYVWFDAPI 270
>03_02_0112 +
5689439-5689474,5689629-5689778,5690194-5690361,
5691334-5691458,5691914-5692007,5692844-5692942,
5693730-5693910,5694051-5694166,5694758-5694913,
5695226-5695354,5695554-5695718
Length = 472
Score = 40.7 bits (91), Expect = 7e-04
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Frame = +3
Query: 189 DARGDQCDKCGKLINAIELIRPRCKVCGHSPTV-KPSEQLFLELGQLEPSIRTWISTVEG 365
D G C C + + EL +C P V + + F L + + + ++
Sbjct: 49 DYEGLYCVSCEEYKDEKELGENKCCPVHLKPCVPRKEDNYFFALSKYQHQLEDLLTKNPN 108
Query: 366 GWSPPARA-VTRAWLREQLRPRAVTR-DLKWGVPVPLPEYSNKVFYVWFDA 512
P R + W++ LR +++R ++WG+PVP + + YVWFDA
Sbjct: 109 FVRPSHRLNEVQGWVKSGLRDFSISRASVEWGIPVP--NDTKQTIYVWFDA 157
>08_02_0352 + 16146025-16146642
Length = 205
Score = 31.5 bits (68), Expect = 0.42
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = -2
Query: 473 WERHRHPPFKVPGNRPGTELFPKPGSRHSSRWR*PPTLHRRDPRPDRR 330
W+ PP + P E + GSR SRWR P R DP D R
Sbjct: 5 WDADPRPP-TLWRRDPVGEAWEASGSRCGSRWRPDPASRRPDPASDGR 51
>11_01_0679 - 5550070-5550201,5550309-5550454,5550577-5551219
Length = 306
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +3
Query: 66 LRDNGFISSQSVDQLLCTNCDRFLADRFVEGTCPFPGCGYEDARGDQCDKC 218
L D ISSQS+ +L T CD R CP E+ D CD C
Sbjct: 187 LSDAERISSQSLKRLNITACDFSEIFRTHIRCCPGVNDDLEECPYDDCDNC 237
>01_06_0622 + 30669015-30669279,30669467-30670419
Length = 405
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 30 EQTEIAQRLFLKLRDNGFISSQSVDQLLCTNCDRFLADRFVEGTCPFPG 176
++ ++ R FL L + +S V C + +R AD V G C FPG
Sbjct: 125 DRDSVSSRHFLALSEQ-VCNSHGVMVNSCHSLERRAADAIVAGLCTFPG 172
>03_01_0248 -
1932992-1933423,1933440-1933489,1933558-1933606,
1933688-1933840
Length = 227
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 246 IRPRCKVCGHSPTVKPSEQLFLELGQLE-PSIRTWISTVEGGWSPPARAV 392
+ P C+ G+ P + ++ L+ G LE SI W+ +SPP+ A+
Sbjct: 73 VNPMCRFKGYMPFPEGNKTLY-GTGSLERASIEQWLQAEAQNFSPPSSAL 121
>12_02_0918 -
24299620-24299748,24299890-24300037,24303105-24303280,
24305870-24305917,24306005-24306116,24306209-24306468
Length = 290
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/64 (31%), Positives = 25/64 (39%)
Frame = -3
Query: 463 TGTPHLRSLVTALGRSCSLSQARVTARAGGDHPPSTVEIHVLIDGSNWPSSRNSCSLGLT 284
T TP R + GRSC S+ TA HP +HVL+ W +
Sbjct: 80 TSTPQNRRIQYVFGRSCLRSRLAATAGRWRAHP----SLHVLV---GWARRMIGFRVSTP 132
Query: 283 VGEC 272
VG C
Sbjct: 133 VGGC 136
>11_04_0365 -
16818468-16818514,16818619-16821706,16822860-16822919,
16823595-16823954
Length = 1184
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 9 FGRTSTNEQTEIAQRLFLKLRDNGFISSQSVDQLLC 116
FGRT + E+ QR FL++ N I + L C
Sbjct: 511 FGRTGSRYYDELVQRSFLQISFNSGIMHDLIHDLAC 546
>09_04_0284 +
16384553-16384755,16384884-16385199,16385889-16385971,
16386802-16386849,16387701-16387965,16388058-16388189,
16388313-16388448,16388557-16388594
Length = 406
Score = 27.9 bits (59), Expect = 5.2
Identities = 9/31 (29%), Positives = 14/31 (45%)
Frame = -3
Query: 121 LVHNNWSTDWELMNPLSLSFKNNRCAISVCS 29
L+ N+W DW + N C I+ C+
Sbjct: 370 LIKNSWGADWGDNGYFKMEMGKNMCGIATCA 400
>06_02_0062 -
11047883-11048032,11048337-11048459,11048625-11048754,
11049232-11049306,11050402-11050467,11050516-11050772
Length = 266
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 457 TPHLRSLVTALGRSCSLSQARVTARAGGD 371
+PHLRSL+ A G S S + TA G D
Sbjct: 10 SPHLRSLLRARGFISSASPSAATAAEGDD 38
>01_07_0082 - 40965947-40967023
Length = 358
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 199 PRASSYPHPGKGQVPST 149
P S+YP PGKG PST
Sbjct: 197 PPQSAYPPPGKGNEPST 213
>01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667
Length = 569
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 15/68 (22%)
Frame = +3
Query: 87 SSQSVDQLLCTNCDRFLADRFV----------EGTCPFPGCGY----EDARGD-QCDKCG 221
SS VD ++C NC R++++R C GCG E+A C+KCG
Sbjct: 403 SSVDVDSVVCKNCKRYISNRTSLLHEAYCVRHNVVCMHDGCGVVLRKEEATDHVHCNKCG 462
Query: 222 KLINAIEL 245
+ E+
Sbjct: 463 QAFQQREM 470
>07_01_0633 -
4735298-4735485,4736083-4736114,4736203-4736297,
4736414-4736487,4736682-4736817,4736902-4736965,
4737101-4737166,4737265-4737446,4737824-4737948,
4738031-4738169,4738250-4738369,4738675-4738746,
4738900-4738935,4739633-4739749,4739821-4739953,
4740053-4740156,4740243-4740370,4740880-4741010,
4741561-4741757,4743906-4744583
Length = 938
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 367 GGHRQREL*REPGLGNSSVPGRLPGTLNGG 456
GGH Q++ ++PG G GR P GG
Sbjct: 37 GGHPQQQQQQQPGYGRGDGGGRGPAPAAGG 66
>06_03_0793 +
24662506-24663512,24664470-24664787,24664996-24665323,
24665465-24665887,24665960-24666252,24666332-24666605,
24666856-24667358,24667464-24667785,24667875-24668220,
24668339-24668997,24669524-24669625,24669656-24670052,
24670155-24670270,24670360-24670386
Length = 1704
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 42 IAQRLFLKLRDNGFISSQSVDQLLCT 119
I + LFL L N +S+ SV QLLC+
Sbjct: 341 IKKHLFLSLLKNSALSAMSVFQLLCS 366
>11_06_0673 -
26114861-26115003,26115141-26115290,26115372-26115561,
26115646-26115851,26117018-26117459
Length = 376
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 135 LADRFVEGTCPFPGCGYED 191
+A R VEGTC FPG + +
Sbjct: 89 VARRLVEGTCSFPGIQFRE 107
>03_02_1002 +
13124398-13124994,13125116-13125346,13125993-13126282,
13126405-13126498
Length = 403
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -3
Query: 463 TGTPHLRSLVTALGRSCSLSQARVTARAGGD 371
TG P L LG S S A TA AGGD
Sbjct: 130 TGCPSALDLAALLGISYSDKAAAATAAAGGD 160
>02_03_0212 -
16460665-16460766,16460971-16461298,16461379-16461502,
16461576-16461825,16462185-16462265,16463030-16463114,
16463200-16463321,16463865-16464672,16464775-16465027,
16465998-16466796
Length = 983
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -3
Query: 397 RVTARAG-GDHPPSTVEIHVLIDGSNWPSSRNSC 299
RV A+AG GD + + IDG W S N C
Sbjct: 421 RVAAKAGFGDDSQRIEALAMSIDGMIWTGSANGC 454
>02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722
Length = 1155
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 394 REPGLGNSSVPGRLPGTLNGGCRCLSQNILTRFSTYGSM 510
R L ++S+ GR+P L GCR L +L +G +
Sbjct: 147 RHLNLSHNSIAGRIPPPLISGCRRLKNVLLHGNRLHGEL 185
>01_01_0832 -
6500139-6500333,6500610-6500875,6501494-6501815,
6501915-6502156,6502229-6502457,6503020-6503184,
6503279-6503605,6504150-6504191,6504333-6504400,
6504748-6504934,6506249-6506311,6506748-6506790,
6506919-6507019,6507110-6507184,6507359-6507445,
6507593-6507682,6507906-6507992,6508585-6508783,
6509113-6509177,6509502-6509606,6509726-6509871,
6510100-6510224,6510335-6510437,6510482-6510596,
6510734-6510869,6511298-6511387,6511484-6511578,
6511698-6511763,6511868-6511936,6512034-6512147,
6512241-6512448,6512545-6512600,6512818-6513552
Length = 1671
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 93 QSVDQLLCTNCDRFLADRFVEGTCPFPGCGYEDARGDQCDKC 218
Q+ +QLLC +CD+ L + G C + CD+C
Sbjct: 359 QAGEQLLCRHCDKLLQSKQYCGICKKIWHHTDGGNWVCCDEC 400
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,756,699
Number of Sequences: 37544
Number of extensions: 366787
Number of successful extensions: 1144
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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