Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_B05
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    28   0.49 
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   4.6  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    25   4.6  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   4.6  
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    25   6.1  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    24   8.0  

>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 28.3 bits (60), Expect = 0.49
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 258  NSNLPANKYMSINRWYRNP*KYSPQWYLTLTYVALDNKS 374
            N   PANK++  NR  +NP  Y     +    VAL  K+
Sbjct: 1101 NGKFPANKFIIFNRLGKNPEDYPNGKTMPFVQVALKKKA 1139


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -1

Query: 200 YVNFEVMMAQRAVRPDFTSIIHEFDPHLSNSKNRAELSVKE 78
           +V  ++ +    ++ D    + E+DP   N K  AEL  K+
Sbjct: 251 FVKHDIPLPPVDLKLDIFEEVGEYDPFHENDKEPAELKAKD 291


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 182 SLQSLHIVNNLGCQKILH-RLLLHYGEFEFAC 274
           +LQS HI N L   K L    L HYG  EF C
Sbjct: 293 TLQSFHIENPLIWAKYLKIEFLTHYGS-EFYC 323


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 240 CYCITGNSNLPANKYMSINRWYRNP 314
           CY I  NS LP + YM    WY +P
Sbjct: 468 CY-INNNSYLPPS-YMDFYTWYNSP 490


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 10  KLEGGNYPGGHALPPSY 60
           +++ GNY  G+AL PSY
Sbjct: 106 EIKEGNYGDGYALQPSY 122


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = +1

Query: 73  MFSFTESSARFLELDRWGSNSCMIDVKSGRTARWAIITSKFTYS 204
           + SF  +  R+++ +    N  + D  S +  +W +  ++FTY+
Sbjct: 194 LVSFAWNCVRWIQENLLDENHIVCDGLSLKDGKWVLDKARFTYN 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,863
Number of Sequences: 5004
Number of extensions: 32713
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)