Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_B05
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259...    28   3.3  
11_06_0698 + 26385989-26389090                                         27   4.4  
11_01_0404 + 3071412-3071464,3073572-3074970                           27   4.4  
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093...    27   4.4  

>03_06_0282 -
           32824950-32825135,32825247-32825505,32825651-32825901,
           32826309-32826425,32826613-32826687,32826788-32827009,
           32827396-32827509,32827694-32827801
          Length = 443

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 198 CKL*SDDGPAGSAAGFHVNHTRVRSP 121
           C +  DDG   S  GF V H   R P
Sbjct: 39  CTIPKDDGTLASYVGFRVQHDNARGP 64


>11_06_0698 + 26385989-26389090
          Length = 1033

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 152 NPAALPAGPSSLQSLHIVNNLGCQKILHRLLL 247
           N  +LP    SLQSL I+N  GC+  L RL L
Sbjct: 602 NICSLPEAIGSLQSLQILNLQGCES-LRRLPL 632


>11_01_0404 + 3071412-3071464,3073572-3074970
          Length = 483

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 7   GKLEGGNYPGGHALPPSYGFLTMFSFTE 90
           G++EG N PG     PSYG L +   ++
Sbjct: 47  GEMEGSNPPGNMTQGPSYGSLDLHGISK 74


>04_04_0678 +
           27207340-27207447,27207555-27207668,27209111-27209332,
           27209407-27209481,27209569-27209685,27210145-27210395,
           27210686-27210761,27210862-27210948,27211037-27211222
          Length = 411

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 198 CKL*SDDGPAGSAAGFHVNHTRVRSP 121
           C +  DDG   S  GF V H   R P
Sbjct: 39  CTIPKDDGTLASFIGFRVQHDNARGP 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,127,499
Number of Sequences: 37544
Number of extensions: 217048
Number of successful extensions: 504
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)