Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_B05
(410 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 24 0.58
AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cycl... 23 1.0
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 2.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 2.4
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 2.4
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.1
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 5.4
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 5.4
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 21 7.2
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 20 9.5
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 24.2 bits (50), Expect = 0.58
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 164 VRPDFTSIIHEFDPHLSNS 108
+ PDFTS + E D HL N+
Sbjct: 119 LEPDFTSDVTERDNHLVNA 137
>AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cyclase
alpha 1 subunit protein.
Length = 699
Score = 23.4 bits (48), Expect = 1.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 243 YCITGNSNLPANKYMSINRWYRNP*KYSPQWYLTLTY 353
YC+ G++ ANK+ S++ R SP Y+ L Y
Sbjct: 604 YCLFGHNVTLANKFESLSEPLRI--HVSPTTYILLKY 638
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 2.4
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +3
Query: 33 RRTCSTTILWFPHD 74
+ TC I WFP D
Sbjct: 108 KSTCKIDIAWFPFD 121
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 2.4
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +3
Query: 33 RRTCSTTILWFPHD 74
+ TC I WFP D
Sbjct: 108 KSTCKIDITWFPFD 121
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 2.4
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +3
Query: 33 RRTCSTTILWFPHD 74
+ TC I WFP D
Sbjct: 108 KSTCKMDIAWFPFD 121
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 2.4
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +3
Query: 33 RRTCSTTILWFPHD 74
+ TC I WFP D
Sbjct: 108 KSTCKIDITWFPFD 121
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 2.4
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +3
Query: 33 RRTCSTTILWFPHD 74
+ TC I WFP D
Sbjct: 176 KSTCKIDITWFPFD 189
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 2.4
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +3
Query: 33 RRTCSTTILWFPHD 74
+ TC I WFP D
Sbjct: 176 KSTCKIDITWFPFD 189
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 2.4
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +3
Query: 33 RRTCSTTILWFPHD 74
+ TC I WFP D
Sbjct: 145 KSTCKIDITWFPFD 158
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.1
Identities = 6/14 (42%), Positives = 8/14 (57%)
Frame = +3
Query: 33 RRTCSTTILWFPHD 74
+ TC + WFP D
Sbjct: 108 KSTCKMDVAWFPFD 121
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.1
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +3
Query: 39 TCSTTILWFPHD 74
TC I WFP D
Sbjct: 110 TCKIDIAWFPFD 121
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.0 bits (42), Expect = 5.4
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = +1
Query: 259 IRICLPINICQLID 300
+R+C+ + + QLID
Sbjct: 54 LRVCIKLKLSQLID 67
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.0 bits (42), Expect = 5.4
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = +1
Query: 259 IRICLPINICQLID 300
+R+C+ + + QLID
Sbjct: 54 LRVCIKLKLSQLID 67
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 20.6 bits (41), Expect = 7.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 407 AFLIIYISSRYTFVVKGY 354
+FL++ I+S Y V GY
Sbjct: 11 SFLLLSIASTYVVSVAGY 28
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 20.2 bits (40), Expect = 9.5
Identities = 8/28 (28%), Positives = 14/28 (50%)
Frame = +3
Query: 273 ANKYMSINRWYRNP*KYSPQWYLTLTYV 356
+N Y+S Y N Y+ + Y + Y+
Sbjct: 86 SNNYISNISNYNNDNNYNKKLYYNINYI 113
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,331
Number of Sequences: 438
Number of extensions: 2398
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
- SilkBase 1999-2023 -