Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_B04
(438 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo... 28 0.55
SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family... 26 2.9
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 25 3.9
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 25 5.1
SPAP11E10.01 |||ornithine cyclodeaminase family |Schizosaccharom... 24 8.9
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 24 8.9
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc... 24 8.9
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 24 8.9
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma... 24 8.9
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 24 8.9
>SPBC582.07c |rpn7||19S proteasome regulatory subunit
Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 409
Score = 28.3 bits (60), Expect = 0.55
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 204 DRALETFAKKQNAQFNLTEDVE-QFDWKRYSNITDEQLHSQLCDGTQRLLEHRSLMLDVP 380
D+A+E A++ N + + E ++ + D+ Y+NI D + QLCD T + +DV
Sbjct: 96 DKAIED-AQELNGEHEILEAMKNKADY--YTNICDRERGVQLCDETFERATLTGMKIDVL 152
Query: 381 GYKVQL 398
K++L
Sbjct: 153 FSKIRL 158
>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 25.8 bits (54), Expect = 2.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 201 HGTRSTHSNIFPGRESVCRLRCVVLQGC 118
H HSN+ P R+ L + +QGC
Sbjct: 79 HAATEVHSNLEPPRKDPHELLHIAIQGC 106
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.4 bits (53), Expect = 3.9
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +3
Query: 219 TFAKKQNAQFNLT--EDVEQF-DWKRYSNITDEQLHSQLCDGTQRLL-EHRSLMLDVPGY 386
T ++N+QF L E + F KRY N+ ++ L + +L EH+ Y
Sbjct: 300 TVKGEENSQFTLKIHERLASFFSQKRYRNVVT--IYGALNEPNFFVLDEHKITDWHKQAY 357
Query: 387 KVQLESNRTGLLSL 428
V +SN TGL+SL
Sbjct: 358 AVIRQSNFTGLISL 371
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 25.0 bits (52), Expect = 5.1
Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +3
Query: 126 AIRRILTCTQTLGPGKCLNALSAYRAD-RALETFAKKQ-NAQFNLTEDVEQFDWK 284
A+R +++C +LG +AL+ + L+ F++K +++ + +++ F WK
Sbjct: 559 AVRLVMSCAYSLGSRSFSHALNVFEKHLNTLKHFSRKSLDSEIEVVDELFSF-WK 612
>SPAP11E10.01 |||ornithine cyclodeaminase family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 330
Score = 24.2 bits (50), Expect = 8.9
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 11 DACARRHSNNRVLVRLARALSIFKNI 88
D C +HS L A A+++FK++
Sbjct: 284 DLCNNKHSGRSQLKNPAEAITLFKSV 309
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 24.2 bits (50), Expect = 8.9
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = -3
Query: 316 CNCSSVILLYRFQSNCSTSSVRLNCAFCFFANV 218
CN + + ++ N N A+C FAN+
Sbjct: 101 CNQNLFLAIHELSHNLGFKKTLYNRAYCLFANL 133
>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 347
Score = 24.2 bits (50), Expect = 8.9
Identities = 6/20 (30%), Positives = 13/20 (65%)
Frame = -3
Query: 331 SHNCECNCSSVILLYRFQSN 272
+HN C C++ + +R++ N
Sbjct: 159 THNDICGCTAAVAFFRYEKN 178
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 24.2 bits (50), Expect = 8.9
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -2
Query: 245 LCVLFFCKCFERSVRTVRAQRIQ 177
LC+LF +C+ R++ A R++
Sbjct: 268 LCLLFMKECYSRTITEQEAARLR 290
>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 354
Score = 24.2 bits (50), Expect = 8.9
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 32 SNNRVLVRLARALSIFKNITTCTKYITR*QPCNTTHLNLHTDSR 163
S + V +A+ALSIFK ++ T P +T LHTD +
Sbjct: 317 STSDVSGMVAQALSIFKQVSKTT------APDKSTPKELHTDEK 354
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 24.2 bits (50), Expect = 8.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 81 KILPRVLNTLLGNNLAIRRILTCTQTLGPGK 173
K+L R+L TLL ++ + +C Q+L G+
Sbjct: 200 KLLNRILFTLLNSDSLVNTSASCLQSLLDGE 230
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,478
Number of Sequences: 5004
Number of extensions: 34391
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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