Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_B04
         (438 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0791 - 24641350-24641418,24641684-24641965,24642318-246425...    32   0.23 
07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874...    27   5.0  
01_01_1188 - 9446764-9446943,9447030-9447232,9447307-9447438,944...    27   6.6  
12_01_0177 - 1312229-1312498,1314758-1315630,1315729-1315885,131...    27   8.7  
10_08_0034 - 14308461-14308799                                         27   8.7  

>06_03_0791 -
           24641350-24641418,24641684-24641965,24642318-24642537,
           24642657-24642776,24643056-24643132,24643220-24643339,
           24644121-24644186,24644265-24644479,24645450-24645582,
           24646562-24646708,24647301-24647596,24648222-24648319,
           24648425-24648471,24649340-24649449,24649663-24649735,
           24650795-24650899
          Length = 725

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +3

Query: 69  YQSSKILPRVLNTLLGNNLAIRRILTCTQTLGPGKCLNALSAYRADRALETFAKKQNAQF 248
           Y   +   RVL+      + IR ++   +TLG G  L+ L  ++   ALE + K   AQF
Sbjct: 365 YPEQEKSERVLSQDSKLAIGIRELMALLRTLGEGYRLSCL--FKCQEALEVYRKLPEAQF 422

Query: 249 N 251
           N
Sbjct: 423 N 423


>07_03_0561 +
           19485218-19485242,19485323-19486467,19487354-19487476,
           19487553-19487626,19487886-19487946,19488285-19488370,
           19488795-19488864,19489026-19489122,19489342-19489481,
           19490225-19490308,19490313-19490346,19491833-19491951
          Length = 685

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 319 ECNCSSVILLYRFQSNCSTSSVRLNCAFCFFANVSSARSA 200
           +CNC  +  L + Q +C  SSVR    FC++  V+  R +
Sbjct: 447 DCNCEILDTLLKKQCDCGHSSVR---HFCWWNKVTLRRDS 483


>01_01_1188 -
           9446764-9446943,9447030-9447232,9447307-9447438,
           9447570-9447657,9447723-9447950,9449542-9449763
          Length = 350

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 129 IRR--ILTCTQTLGPGKCLN-ALSAYRADRALETFAKKQNAQFNLTEDVEQF 275
           IRR  +L+CT+        N + +  RA ++ ET++   N    L ED+E F
Sbjct: 156 IRRHPVLSCTEKYLTSTISNQSRNTCRAAKSEETYSMSTNCAEKLAEDIENF 207


>12_01_0177 -
           1312229-1312498,1314758-1315630,1315729-1315885,
           1316207-1316247
          Length = 446

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 159 ESVCRLRCVVLQGCY 115
           E +CRL+C+ +QGC+
Sbjct: 273 EPLCRLQCLSIQGCH 287


>10_08_0034 - 14308461-14308799
          Length = 112

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 210 LGPHGTRSTHSNIFPGRESVCRLRCVVL 127
           LG  G  S+H ++ P R S+ R  C+ L
Sbjct: 74  LGSGGALSSHPDVAPARSSLLRRCCICL 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,529,634
Number of Sequences: 37544
Number of extensions: 217087
Number of successful extensions: 569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)