Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_B04
         (438 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U79725-1|AAC50957.1|  319|Homo sapiens A33 antigen precursor pro...    31   2.3  
BC107165-1|AAI07166.1|  319|Homo sapiens glycoprotein A33 (trans...    31   2.3  
BC107164-1|AAI07165.1|  319|Homo sapiens glycoprotein A33 (trans...    31   2.3  
BC074876-1|AAH74876.1|  319|Homo sapiens transmembrane glycoprot...    31   2.3  
BC074830-1|AAH74830.1|  319|Homo sapiens glycoprotein A33 (trans...    31   2.3  
BC069789-1|AAH69789.1|  319|Homo sapiens glycoprotein A33 (trans...    31   2.3  
BC069761-1|AAH69761.1|  319|Homo sapiens glycoprotein A33 (trans...    31   2.3  
BC069745-1|AAH69745.1|  319|Homo sapiens glycoprotein A33 (trans...    31   2.3  
BC069723-1|AAH69723.1|  319|Homo sapiens glycoprotein A33 (trans...    31   2.3  
BC069705-1|AAH69705.1|  319|Homo sapiens glycoprotein A33 (trans...    31   2.3  
AL158837-3|CAH69957.1|  319|Homo sapiens glycoprotein A33 (trans...    31   2.3  

>U79725-1|AAC50957.1|  319|Homo sapiens A33 antigen precursor
           protein.
          Length = 319

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 270 QFDWKRYSNITDEQLHSQLCDGTQRLLEHRSLMLDVPGYKVQLESNRTG 416
           Q+ WKRY+ +  EQ  +Q   G    L  +++  D  GY +   SN  G
Sbjct: 172 QYSWKRYNILNQEQPLAQPASGQPVSL--KNISTDTSGYYICTSSNEEG 218


>BC107165-1|AAI07166.1|  319|Homo sapiens glycoprotein A33
           (transmembrane) protein.
          Length = 319

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 270 QFDWKRYSNITDEQLHSQLCDGTQRLLEHRSLMLDVPGYKVQLESNRTG 416
           Q+ WKRY+ +  EQ  +Q   G    L  +++  D  GY +   SN  G
Sbjct: 172 QYSWKRYNILNQEQPLAQPASGQPVSL--KNISTDTSGYYICTSSNEEG 218


>BC107164-1|AAI07165.1|  319|Homo sapiens glycoprotein A33
           (transmembrane) protein.
          Length = 319

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 270 QFDWKRYSNITDEQLHSQLCDGTQRLLEHRSLMLDVPGYKVQLESNRTG 416
           Q+ WKRY+ +  EQ  +Q   G    L  +++  D  GY +   SN  G
Sbjct: 172 QYSWKRYNILNQEQPLAQPASGQPVSL--KNISTDTSGYYICTSSNEEG 218


>BC074876-1|AAH74876.1|  319|Homo sapiens transmembrane glycoprotein
           A33, precursor protein.
          Length = 319

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 270 QFDWKRYSNITDEQLHSQLCDGTQRLLEHRSLMLDVPGYKVQLESNRTG 416
           Q+ WKRY+ +  EQ  +Q   G    L  +++  D  GY +   SN  G
Sbjct: 172 QYSWKRYNILNQEQPLAQPASGQPVSL--KNISTDTSGYYICTSSNEEG 218


>BC074830-1|AAH74830.1|  319|Homo sapiens glycoprotein A33
           (transmembrane) protein.
          Length = 319

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 270 QFDWKRYSNITDEQLHSQLCDGTQRLLEHRSLMLDVPGYKVQLESNRTG 416
           Q+ WKRY+ +  EQ  +Q   G    L  +++  D  GY +   SN  G
Sbjct: 172 QYSWKRYNILNQEQPLAQPASGQPVSL--KNISTDTSGYYICTSSNEEG 218


>BC069789-1|AAH69789.1|  319|Homo sapiens glycoprotein A33
           (transmembrane) protein.
          Length = 319

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 270 QFDWKRYSNITDEQLHSQLCDGTQRLLEHRSLMLDVPGYKVQLESNRTG 416
           Q+ WKRY+ +  EQ  +Q   G    L  +++  D  GY +   SN  G
Sbjct: 172 QYSWKRYNILNQEQPLAQPASGQPVSL--KNISTDTSGYYICTSSNEEG 218


>BC069761-1|AAH69761.1|  319|Homo sapiens glycoprotein A33
           (transmembrane) protein.
          Length = 319

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 270 QFDWKRYSNITDEQLHSQLCDGTQRLLEHRSLMLDVPGYKVQLESNRTG 416
           Q+ WKRY+ +  EQ  +Q   G    L  +++  D  GY +   SN  G
Sbjct: 172 QYSWKRYNILNQEQPLAQPASGQPVSL--KNISTDTSGYYICTSSNEEG 218


>BC069745-1|AAH69745.1|  319|Homo sapiens glycoprotein A33
           (transmembrane) protein.
          Length = 319

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 270 QFDWKRYSNITDEQLHSQLCDGTQRLLEHRSLMLDVPGYKVQLESNRTG 416
           Q+ WKRY+ +  EQ  +Q   G    L  +++  D  GY +   SN  G
Sbjct: 172 QYSWKRYNILNQEQPLAQPASGQPVSL--KNISTDTSGYYICTSSNEEG 218


>BC069723-1|AAH69723.1|  319|Homo sapiens glycoprotein A33
           (transmembrane) protein.
          Length = 319

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 270 QFDWKRYSNITDEQLHSQLCDGTQRLLEHRSLMLDVPGYKVQLESNRTG 416
           Q+ WKRY+ +  EQ  +Q   G    L  +++  D  GY +   SN  G
Sbjct: 172 QYSWKRYNILNQEQPLAQPASGQPVSL--KNISTDTSGYYICTSSNEEG 218


>BC069705-1|AAH69705.1|  319|Homo sapiens glycoprotein A33
           (transmembrane) protein.
          Length = 319

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 270 QFDWKRYSNITDEQLHSQLCDGTQRLLEHRSLMLDVPGYKVQLESNRTG 416
           Q+ WKRY+ +  EQ  +Q   G    L  +++  D  GY +   SN  G
Sbjct: 172 QYSWKRYNILNQEQPLAQPASGQPVSL--KNISTDTSGYYICTSSNEEG 218


>AL158837-3|CAH69957.1|  319|Homo sapiens glycoprotein A33
           (transmembrane) protein.
          Length = 319

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 270 QFDWKRYSNITDEQLHSQLCDGTQRLLEHRSLMLDVPGYKVQLESNRTG 416
           Q+ WKRY+ +  EQ  +Q   G    L  +++  D  GY +   SN  G
Sbjct: 172 QYSWKRYNILNQEQPLAQPASGQPVSL--KNISTDTSGYYICTSSNEEG 218


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,122,242
Number of Sequences: 237096
Number of extensions: 1186157
Number of successful extensions: 5295
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5276
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)