Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_B04
         (438 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.5  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   3.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   3.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   4.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   4.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   4.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   5.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 70  INLQKYYHVY*IHYSVTTLQYDAS*PAHRLSAR 168
           +N+ ++Y  +   YSV+ +  D S   + +SAR
Sbjct: 291 LNVNEFYMAFSKLYSVSVVSLDKSLEVNHISAR 323


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 95  CTKYITR*QPCNTTHLNLHTDSRPGKMFEC 184
           C K  TR     T H+ LHT  +P     C
Sbjct: 15  CHKRFTRDHHLKT-HMRLHTGEKPYHCSHC 43


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 288 YSNITDEQLHSQLCDGTQRLL 350
           YS+ TDE  HS   D   ++L
Sbjct: 233 YSHTTDENRHSSTLDIDHKML 253


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 277 IGNDTVISLMN 309
           +GNDTVI +MN
Sbjct: 502 LGNDTVIVMMN 512


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 74  IFKNITTCTKYI 109
           IF NITTCT  I
Sbjct: 55  IFGNITTCTVII 66


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 137 HLNLHTDSRPGKMFEC 184
           H+ +HT  RP K   C
Sbjct: 166 HMRIHTGERPHKCTVC 181


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 385 YPGTSNINDRCSSSL*VPSHNCECNCSSV 299
           YP T  +N +C++    PS   +C+ +SV
Sbjct: 345 YPSTETLNTKCNTLERTPS---KCSQTSV 370


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 228 KKQNAQFNLTEDVEQFDWKRYSNITDEQL 314
           +K+ A+ +  E +E FDWK+ + ++D  L
Sbjct: 405 EKRLAEQDRRERME-FDWKQVALVSDRAL 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,124
Number of Sequences: 438
Number of extensions: 2453
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)