Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_B03
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   3.4  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   3.4  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    25   4.5  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   4.5  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   4.5  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   7.8  

>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +3

Query: 285 KAYAGERWSECISQFEESINLYKLYRGMILNCRLKCNTKNYIPKINENIEDLIIYEK 455
           K+Y G RW+E I+ F   +++  +Y        LK  T+N + +  E   + +++ +
Sbjct: 288 KSYLGWRWTEYITSFMGFLSIILIYL-FCEETYLKTITENKVQEYREITGNQLVHAR 343


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 345 NLLILQTD*YTLTIFHLHKPLYLYHK 268
           NLL+L T  Y +  F +H+ L LY K
Sbjct: 152 NLLVLLTKHYHVKSFRIHQLLALYQK 177


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 291 YAGERWSECISQFEESINLYKLYRGMILNCRLK 389
           ++G RW + +  F+E       +R +IL C L+
Sbjct: 314 FSGSRWQKIVKTFKELYFNPSNFRALILACGLQ 346


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 429 YFRLFLEYSFLYYTLIYN*VSSLCK 355
           YF LF  +SFL+ +L +N    LC+
Sbjct: 113 YFSLFSFFSFLFTSLHFNFFFRLCR 137


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
 Frame = +3

Query: 312 ECISQFEESINLYKL-----YRGMILNCRLKCNTKNYIPKINENIEDLI--IYEKFFN 464
           ECI     ++ L  L       G+I +C L  + +  + K+ ENI  L+  I E+  N
Sbjct: 360 ECIGMLAAAVKLELLEDSRSLLGLIFSCELSVHLRQALVKMAENIPPLLAPIQERLLN 417


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -2

Query: 241 QLLTNNVEQRKRIWKVNDTILIKFALSEQLL 149
           Q + N++E+   +W+ N+T +    ++E+LL
Sbjct: 261 QSMQNDLEKECEVWRANNTTVEDREVAEKLL 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,175
Number of Sequences: 5004
Number of extensions: 30401
Number of successful extensions: 73
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)