Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_B03
(473 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC008745-1|AAH08745.1| 401|Homo sapiens cartilage associated pr... 36 0.054
AJ006470-1|CAA07054.1| 401|Homo sapiens cartilage-associated pr... 36 0.054
U47621-1|AAC51792.1| 437|Homo sapiens nucleolar autoantigen No5... 31 2.7
BC011701-1|AAH11701.1| 437|Homo sapiens synaptonemal complex pr... 31 2.7
BC007942-1|AAH07942.1| 437|Homo sapiens synaptonemal complex pr... 31 2.7
BC001047-1|AAH01047.1| 437|Homo sapiens synaptonemal complex pr... 31 2.7
AK222945-1|BAD96665.1| 437|Homo sapiens synaptonemal complex pr... 31 2.7
AJ250583-1|CAC16786.1| 437|Homo sapiens nucleolar protein No55 ... 31 2.7
BC069149-1|AAH69149.1| 321|Homo sapiens OR5V1 protein protein. 30 3.6
M22734-1|AAA60048.1| 1089|Homo sapiens platelet-derived growth f... 30 4.7
M21574-1|AAA96715.1| 1089|Homo sapiens platelet-derived growth f... 30 4.7
D50017-1|BAA08742.1| 1089|Homo sapiens alpha-platelet-derived gr... 30 4.7
AY229892-1|AAP69563.1| 849|Homo sapiens FIP1L1/PDGFRA fusion pr... 30 4.7
AL732432-1|CAI17829.1| 321|Homo sapiens olfactory receptor, fam... 29 8.2
AL662781-4|CAI18131.1| 321|Homo sapiens olfactory receptor, fam... 29 8.2
AL096770-3|CAB65797.1| 321|Homo sapiens olfactory receptor, fam... 29 8.2
AJ459859-1|CAD31042.1| 321|Homo sapiens olfactory receptor prot... 29 8.2
>BC008745-1|AAH08745.1| 401|Homo sapiens cartilage associated
protein protein.
Length = 401
Score = 36.3 bits (80), Expect = 0.054
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 246 KLSLIERTYDKGIKAYAGERWSECISQFEESINLYKLYRGMILNCRLKCN 395
+L +E Y + Y+GE W+E + E S+ L++L R C C+
Sbjct: 40 ELMPLESAYRHALDKYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCS 89
>AJ006470-1|CAA07054.1| 401|Homo sapiens cartilage-associated
protein (CASP) protein.
Length = 401
Score = 36.3 bits (80), Expect = 0.054
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 246 KLSLIERTYDKGIKAYAGERWSECISQFEESINLYKLYRGMILNCRLKCN 395
+L +E Y + Y+GE W+E + E S+ L++L R C C+
Sbjct: 40 ELMPLESAYRHALDKYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCS 89
>U47621-1|AAC51792.1| 437|Homo sapiens nucleolar autoantigen No55
protein.
Length = 437
Score = 30.7 bits (66), Expect = 2.7
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +3
Query: 270 YDKGIKAYAGERWSECISQFEESINLYKLYRGMILNCRLKCN 395
Y ++ Y GE W E E ++ L++L R C C+
Sbjct: 40 YGHALEQYEGESWRESARYLEAALRLHRLLRDSEAFCHANCS 81
>BC011701-1|AAH11701.1| 437|Homo sapiens synaptonemal complex
protein SC65 protein.
Length = 437
Score = 30.7 bits (66), Expect = 2.7
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +3
Query: 270 YDKGIKAYAGERWSECISQFEESINLYKLYRGMILNCRLKCN 395
Y ++ Y GE W E E ++ L++L R C C+
Sbjct: 40 YGHALEQYEGESWRESARYLEAALRLHRLLRDSEAFCHANCS 81
>BC007942-1|AAH07942.1| 437|Homo sapiens synaptonemal complex
protein SC65 protein.
Length = 437
Score = 30.7 bits (66), Expect = 2.7
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +3
Query: 270 YDKGIKAYAGERWSECISQFEESINLYKLYRGMILNCRLKCN 395
Y ++ Y GE W E E ++ L++L R C C+
Sbjct: 40 YGHALEQYEGESWRESARYLEAALRLHRLLRDSEAFCHANCS 81
>BC001047-1|AAH01047.1| 437|Homo sapiens synaptonemal complex
protein SC65 protein.
Length = 437
Score = 30.7 bits (66), Expect = 2.7
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +3
Query: 270 YDKGIKAYAGERWSECISQFEESINLYKLYRGMILNCRLKCN 395
Y ++ Y GE W E E ++ L++L R C C+
Sbjct: 40 YGHALEQYEGESWRESARYLEAALRLHRLLRDSEAFCHANCS 81
>AK222945-1|BAD96665.1| 437|Homo sapiens synaptonemal complex
protein SC65 variant protein.
Length = 437
Score = 30.7 bits (66), Expect = 2.7
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +3
Query: 270 YDKGIKAYAGERWSECISQFEESINLYKLYRGMILNCRLKCN 395
Y ++ Y GE W E E ++ L++L R C C+
Sbjct: 40 YGHALEQYEGESWRESARYLEAALRLHRLLRDSEAFCHANCS 81
>AJ250583-1|CAC16786.1| 437|Homo sapiens nucleolar protein No55
protein.
Length = 437
Score = 30.7 bits (66), Expect = 2.7
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +3
Query: 270 YDKGIKAYAGERWSECISQFEESINLYKLYRGMILNCRLKCN 395
Y ++ Y GE W E E ++ L++L R C C+
Sbjct: 40 YGHALEQYEGESWRESARYLEAALRLHRLLRDSEAFCHANCS 81
>BC069149-1|AAH69149.1| 321|Homo sapiens OR5V1 protein protein.
Length = 321
Score = 30.3 bits (65), Expect = 3.6
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = -3
Query: 411 EYSFLYYTLIYN*VSSLCKVCINLLILQTD*YTLTIFHLHKPLYLY 274
E+ FL +T+ + ++ C + N+LI+ T T+T HLH P+Y +
Sbjct: 22 EWQFLLFTIFF--LTYFCTLGGNILIILT---TVTDPHLHTPMYYF 62
>M22734-1|AAA60048.1| 1089|Homo sapiens platelet-derived growth
factor A receptor protein.
Length = 1089
Score = 29.9 bits (64), Expect = 4.7
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 135 RSLISNNCSESANLIKMVSFTFQILFLCSTLLVSNCLKLSLIER 266
++L+S++ SE L+ ++SFT+Q+ L NC+ L R
Sbjct: 779 KNLLSDDNSEGLTLLDLLSFTYQVARGMEFLASKNCVHRDLAAR 822
>M21574-1|AAA96715.1| 1089|Homo sapiens platelet-derived growth
factor receptor A chain protein.
Length = 1089
Score = 29.9 bits (64), Expect = 4.7
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 135 RSLISNNCSESANLIKMVSFTFQILFLCSTLLVSNCLKLSLIER 266
++L+S++ SE L+ ++SFT+Q+ L NC+ L R
Sbjct: 779 KNLLSDDNSEGLTLLDLLSFTYQVARGMEFLASKNCVHRDLAAR 822
>D50017-1|BAA08742.1| 1089|Homo sapiens alpha-platelet-derived
growth factor receptor protein.
Length = 1089
Score = 29.9 bits (64), Expect = 4.7
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 135 RSLISNNCSESANLIKMVSFTFQILFLCSTLLVSNCLKLSLIER 266
++L+S++ SE L+ ++SFT+Q+ L NC+ L R
Sbjct: 779 KNLLSDDNSEGLTLLDLLSFTYQVARGMEFLASKNCVHRDLAAR 822
>AY229892-1|AAP69563.1| 849|Homo sapiens FIP1L1/PDGFRA fusion
protein protein.
Length = 849
Score = 29.9 bits (64), Expect = 4.7
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 135 RSLISNNCSESANLIKMVSFTFQILFLCSTLLVSNCLKLSLIER 266
++L+S++ SE L+ ++SFT+Q+ L NC+ L R
Sbjct: 539 KNLLSDDNSEGLTLLDLLSFTYQVARGMEFLASKNCVHRDLAAR 582
>AL732432-1|CAI17829.1| 321|Homo sapiens olfactory receptor, family
5, subfamily V, member protein.
Length = 321
Score = 29.1 bits (62), Expect = 8.2
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = -3
Query: 411 EYSFLYYTLIYN*VSSLCKVCINLLILQTD*YTLTIFHLHKPLYLY 274
E FL +T+ + ++ C + N+LI+ T T+T HLH P+Y +
Sbjct: 22 ELQFLLFTIFF--LTYFCTLGGNILIILT---TVTDPHLHTPMYYF 62
>AL662781-4|CAI18131.1| 321|Homo sapiens olfactory receptor, family
5, subfamily V, memberta protein.
Length = 321
Score = 29.1 bits (62), Expect = 8.2
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = -3
Query: 411 EYSFLYYTLIYN*VSSLCKVCINLLILQTD*YTLTIFHLHKPLYLY 274
E FL +T+ + ++ C + N+LI+ T T+T HLH P+Y +
Sbjct: 22 ELQFLLFTIFF--LTYFCTLGGNILIILT---TVTDPHLHTPMYYF 62
>AL096770-3|CAB65797.1| 321|Homo sapiens olfactory receptor, family
5, subfamily V, memberrevisiae) protein.
Length = 321
Score = 29.1 bits (62), Expect = 8.2
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = -3
Query: 411 EYSFLYYTLIYN*VSSLCKVCINLLILQTD*YTLTIFHLHKPLYLY 274
E FL +T+ + ++ C + N+LI+ T T+T HLH P+Y +
Sbjct: 22 ELQFLLFTIFF--LTYFCTLGGNILIILT---TVTDPHLHTPMYYF 62
>AJ459859-1|CAD31042.1| 321|Homo sapiens olfactory receptor
protein.
Length = 321
Score = 29.1 bits (62), Expect = 8.2
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = -3
Query: 411 EYSFLYYTLIYN*VSSLCKVCINLLILQTD*YTLTIFHLHKPLYLY 274
E FL +T+ + ++ C + N+LI+ T T+T HLH P+Y +
Sbjct: 22 ELQFLLFTIFF--LTYFCTLGGNILIILT---TVTDPHLHTPMYYF 62
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,533,315
Number of Sequences: 237096
Number of extensions: 888201
Number of successful extensions: 1651
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1651
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4156838854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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