Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_B03
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-21|CAB70232.1|  476|Caenorhabditis elegans Hypothetical...    35   0.026
Z68749-1|CAA92960.2|  309|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AL132862-21|CAB70232.1|  476|Caenorhabditis elegans Hypothetical
           protein Y73F8A.26 protein.
          Length = 476

 Score = 35.1 bits (77), Expect = 0.026
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 261 ERTYDKGIKAYAGERWSECISQFEESINLYKLYRGMILNCRLKCN 395
           E  +  G   Y    W +C++  + +I+ ++ Y+  +++CR KCN
Sbjct: 25  EDYFQFGKNEYTERNWPDCVAFMKRAIDDFRQYQDDVVSCRRKCN 69



 Score = 29.9 bits (64), Expect = 0.98
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 261 ERTYDKGIKAYAGERWSECISQFEESINLYKLYRGMILNCRLKCNTK 401
           E  +  G++AY  + W  C+++FE ++    +       CRL C  K
Sbjct: 184 EAKFINGVEAYDQQDWGRCVNEFESALEKSIIQDE---KCRLLCQDK 227


>Z68749-1|CAA92960.2|  309|Caenorhabditis elegans Hypothetical
           protein F56H11.3 protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 145 YLIIVLRVQI*LKWYHLLSKFFFFVQHY 228
           +L++  +  I L WYH ++ F FF  +Y
Sbjct: 165 FLVLRKKPLIFLHWYHHMATFVFFCSNY 192


>Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical
           protein F28C1.1 protein.
          Length = 672

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 309 SECISQFEESINLYKLYRGMILNCRLKCNTKNYIPKI 419
           +E + + E+ +  ++ YR +I+N   K + K+Y+ KI
Sbjct: 103 TEIVDEKEQIVTDFERYRVLIINDYKKVSEKHYLKKI 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,952,250
Number of Sequences: 27780
Number of extensions: 161732
Number of successful extensions: 430
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)