Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_B02
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    49   2e-06
AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin pro...    48   3e-06
U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z68215-16|CAD59144.1|  458|Caenorhabditis elegans Hypothetical p...    28   4.7  
Z68160-5|CAA92293.2|  458|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z81531-1|CAB04314.2|  436|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U50193-8|AAL11478.2|  394|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 23/58 (39%), Positives = 36/58 (62%)
 Frame = +3

Query: 339 HNPCKDSMHAQIQTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLI 512
           H+  + +++ QI  E+ AS  YL+M  +F RD +  P  AK F + + EEREHA +L+
Sbjct: 9   HSEVEAAVNKQINIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATELM 66


>AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin
           protein 1 protein.
          Length = 170

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 24/58 (41%), Positives = 35/58 (60%)
 Frame = +3

Query: 339 HNPCKDSMHAQIQTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLI 512
           H+  + +++ QI  E+ AS  YL+M AHF RD I     AK F + + EER HA +L+
Sbjct: 9   HDEVEAAVNKQINVELYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHATELM 66


>U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical
           protein F09F7.3 protein.
          Length = 1154

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = +3

Query: 288 IQCHV---NPANVSSEWVTMHNPCKDSMHAQIQTEVDASVQYLAMGAHFSRDVINRPGFA 458
           +QC V        S  +VTM        H Q+  +V  S+ + AMG     D+++  G  
Sbjct: 202 LQCEVLSSTSERKSKTYVTMKKGKYSVRHNQLTDDVPVSIIFKAMGVESDFDIVSTIGHE 261

Query: 459 KLFFDAASEEREHAM 503
           + +  A ++  E ++
Sbjct: 262 EKYVSAFAQTLEESI 276


>Z68215-16|CAD59144.1|  458|Caenorhabditis elegans Hypothetical
           protein D1046.5 protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 234 ALFLAIVGTLAVSTPAIAIQCHVNPANVSSEWVTM 338
           ++ +A++GTL VS P  A+Q  +    + + W+ +
Sbjct: 180 SILIALLGTLLVSIPHTAVQVIIEMKIIDNSWLPL 214


>Z68160-5|CAA92293.2|  458|Caenorhabditis elegans Hypothetical
           protein D1046.5 protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 234 ALFLAIVGTLAVSTPAIAIQCHVNPANVSSEWVTM 338
           ++ +A++GTL VS P  A+Q  +    + + W+ +
Sbjct: 180 SILIALLGTLLVSIPHTAVQVIIEMKIIDNSWLPL 214


>Z81531-1|CAB04314.2|  436|Caenorhabditis elegans Hypothetical
           protein F36D3.1 protein.
          Length = 436

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -3

Query: 484 SLAASKNSFANPGRLITSREK--WAPIARYCTDASTSVCICACMLSLQGLCIVTHS 323
           ++A + N+FA P  +        W+P  ++  D    +    C   L G CI T++
Sbjct: 73  TVATTPNAFALPQEIGEKYADAVWSPYLKFVKDDENDIFTSGCRGGLLGECIFTYA 128


>U50193-8|AAL11478.2|  394|Caenorhabditis elegans Hypothetical
           protein ZK328.6 protein.
          Length = 394

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 240 FLAIVGTLAVSTPAIAIQCHVNP 308
           FLAI GTL      + +Q HVNP
Sbjct: 147 FLAIEGTLFSELQQLTLQVHVNP 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,094,394
Number of Sequences: 27780
Number of extensions: 251477
Number of successful extensions: 549
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)