Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_B01
         (537 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0115 + 20288220-20288303,20289223-20289706,20290160-202903...    33   0.14 
02_01_0124 + 901034-901153,901455-901481,901713-901792,903739-90...    27   7.2  
02_02_0025 + 6183328-6186127,6186265-6186623                           27   9.5  
01_03_0047 + 11939747-11939857,11940058-11940121,11940123-119402...    27   9.5  

>11_06_0115 + 20288220-20288303,20289223-20289706,20290160-20290393,
            20291811-20292770,20292931-20293404,20293406-20294664
          Length = 1164

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = +3

Query: 156  LFSVAILCCSNLSFARQVPKECSKGPEVWCQSLKRGADCGAVGHCIATVWETENVDISPN 335
            +FS   +  S+     Q+P+E +    +   +L R    G +   I ++W  E++D+S N
Sbjct: 960  IFSAVNIDLSSNYLVGQIPEEIASLALLKNLNLSRNYLSGKIPQKIGSLWSLESLDLSRN 1019

Query: 336  EVSVKFVRLFRQLKDIKDL-INEEYLGARISS 428
            ++S +       L  + DL ++   L  RI S
Sbjct: 1020 KLSGEIPPSLSNLSYLSDLDLSHNNLSGRIPS 1051


>02_01_0124 +
           901034-901153,901455-901481,901713-901792,903739-903811,
           904015-904072,904561-904615,905140-905164,905361-905421,
           907416-907531,907661-907812,907918-908003,908182-908309,
           908451-908501,908774-908860,908964-909033,909351-909407,
           909729-909865,910313-910390,910971-911057
          Length = 515

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 129 ATMTSTFVCLFSVAILCCSNL-SFARQVPKECSKGPEVWC 245
           A +T+ F  L  +A LC + L S  R +PKE +    VWC
Sbjct: 241 AVLTAYFFIL-GIAALCATLLPSIKRFLPKEWNDNAIVWC 279


>02_02_0025 + 6183328-6186127,6186265-6186623
          Length = 1052

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/79 (20%), Positives = 32/79 (40%)
 Frame = +3

Query: 156 LFSVAILCCSNLSFARQVPKECSKGPEVWCQSLKRGADCGAVGHCIATVWETENVDISPN 335
           L ++  L  SN      +P    K   +    ++     G++ H +  +   + +D+S N
Sbjct: 559 LINLGSLSISNNRLTSNIPSTLGKCVLLESLHMEENLLVGSIPHFLMNLRSIKELDLSSN 618

Query: 336 EVSVKFVRLFRQLKDIKDL 392
            +S      F  +  +KDL
Sbjct: 619 NLSGSIPDFFASMNYLKDL 637


>01_03_0047 +
           11939747-11939857,11940058-11940121,11940123-11940253,
           11940325-11940432,11942735-11942783,11943188-11943279,
           11944394-11944468,11944553-11944658,11944740-11944786,
           11944856-11944913,11945299-11945348,11945728-11945784,
           11945909-11945916,11946020-11946055,11946904-11946937,
           11947030-11947092,11947223-11947237
          Length = 367

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +3

Query: 312 ENVDISPNEVSVKFV-RLFRQLKDIKDLINEEYLGARISSACHDVQYPAGAKICKE 476
           E V+ + NE  V  V    R+  D+K+  ++EY+GA+ +SA H ++    + I K+
Sbjct: 9   EQVEDTDNENDVVIVGSRQRERWDMKE--SKEYMGAKFTSAHHKIKSQNTSNILKD 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,120,217
Number of Sequences: 37544
Number of extensions: 307622
Number of successful extensions: 850
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)