Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_B01
         (537 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical...    33   0.099
AF039045-11|AAB94202.1|  259|Caenorhabditis elegans Hypothetical...    29   2.1  
AC024776-12|AAK68460.1|  263|Caenorhabditis elegans Delta/serrat...    29   2.8  

>AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical
            protein Y67A10A.3 protein.
          Length = 1237

 Score = 33.5 bits (73), Expect = 0.099
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 142  LVMVAVHDLMRSSFVLCKYKQYKINTWQFHFECYCVSIDKQVVRSLV 2
            LV+V  H +  + +  C Y  YK++ W+  F  + V  D + V ++V
Sbjct: 957  LVLVVAHAMSAALWTSCHYYSYKMDDWERPFSHFVVKTDSEGVWNIV 1003


>AF039045-11|AAB94202.1|  259|Caenorhabditis elegans Hypothetical
           protein F15E11.5 protein.
          Length = 259

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 396 NEEYLGARISSACHDVQYPAGAKICKENTGNLEQYMHHVLKS 521
           N +      S+ C D+Q+P    + +EN   L Q M H++ S
Sbjct: 50  NADLFPTNCSTVCADIQFPYNNDLTEENLTVLFQNMKHLIGS 91


>AC024776-12|AAK68460.1|  263|Caenorhabditis elegans
           Delta/serrate/lag-2 domain protein3 protein.
          Length = 263

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 171 ILCCSNLSFARQVPKECSKGPEVWCQSLKRGADC 272
           + CCS    A +V K C+   ++ C   KRG DC
Sbjct: 132 VFCCSET--ASRVGKVCNSHGQLGCPQGKRGLDC 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,321,251
Number of Sequences: 27780
Number of extensions: 287049
Number of successful extensions: 865
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)