Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_A24
(473 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 200 9e-53
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 134 5e-33
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 122 4e-29
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 120 1e-28
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 111 4e-26
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 108 5e-25
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 94 8e-21
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 85 7e-18
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 48 7e-07
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 32 0.051
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 31 0.12
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 27 1.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 3.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 3.4
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 25 4.5
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 25 4.5
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 25 4.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 5.9
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa... 25 5.9
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp... 25 5.9
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 25 5.9
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy... 25 7.8
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 25 7.8
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 7.8
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 200 bits (488), Expect = 9e-53
Identities = 97/155 (62%), Positives = 122/155 (78%)
Frame = +1
Query: 7 GKMQPQILLLREGTDQTQCKPQLISNINACQLVVDAVRTTLGPWGMDKLIVDHSGKAVIS 186
G Q +++L+EGTD +Q + QL+SNINAC V D +RTTLGP G DKL+VD G+ VIS
Sbjct: 4 GGPQIPVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVIS 63
Query: 187 NDGATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEEGVHPR 366
NDGATIMKLLDIVHPAAKTLVDIA++QDAEVGDGTTSVV+ AGELL+ R FVE+GV
Sbjct: 64 NDGATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSH 123
Query: 367 VIVRAVRTAAKLAVDKVKELAVKIDKKSPEEQREL 471
+I+R R AA+LAV+K+KE+A+ +D + R+L
Sbjct: 124 LIIRGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDL 158
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 134 bits (325), Expect = 5e-33
Identities = 68/137 (49%), Positives = 94/137 (68%), Gaps = 2/137 (1%)
Frame = +1
Query: 52 QTQCKPQLI--SNINACQLVVDAVRTTLGPWGMDKLIVDHSGKAVISNDGATIMKLLDIV 225
Q + KPQ + SNI A + V DA+RT+LGP GMDK+I G+ +++NDGATI+K L ++
Sbjct: 12 QDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVL 71
Query: 226 HPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEEGVHPRVIVRAVRTAAKLA 405
HPAAK LVD++ +QD E GDGTTSVVILAG +L +++G+HP VI + + AA
Sbjct: 72 HPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFT 131
Query: 406 VDKVKELAVKIDKKSPE 456
VD +KE A+ I+ E
Sbjct: 132 VDCMKENALAIELSDRE 148
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 122 bits (293), Expect = 4e-29
Identities = 55/141 (39%), Positives = 94/141 (66%)
Frame = +1
Query: 19 PQILLLREGTDQTQCKPQLISNINACQLVVDAVRTTLGPWGMDKLIVDHSGKAVISNDGA 198
P ++ G Q K Q+ SNI A + V D +RT LGP M K+++D G +++NDG
Sbjct: 4 PVFVMNTNGNRQVGHKAQM-SNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGH 62
Query: 199 TIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEEGVHPRVIVR 378
I++ +++ HPAAK+++++A++QD EVGDGTTSV+ILAGE+L P ++ +HP V++R
Sbjct: 63 AILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIR 122
Query: 379 AVRTAAKLAVDKVKELAVKID 441
+ + A + A+ + E+ + ++
Sbjct: 123 SFKQALEDALSIIDEITLPVN 143
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 120 bits (289), Expect = 1e-28
Identities = 57/126 (45%), Positives = 83/126 (65%), Gaps = 1/126 (0%)
Frame = +1
Query: 82 NINACQLVVDAVRTTLGPWGMDKLIVDHSGKAVISNDGATIMKLLDIVHPAAKTLVDIAK 261
N+ A + + V+++LGP G+DK++VD G ++NDGATI+ LLD+ HPA K LV++A+
Sbjct: 26 NVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEHPAGKVLVELAQ 85
Query: 262 SQDAEVGDGTTSVVILAGELLKRLRPFVEEGVHPRVIVRAVRTAAKLAVDKVKE-LAVKI 438
QD EVGDGTTSVVI+A ELL+R V+ +HP I+ R A + AV + + L+ +
Sbjct: 86 QQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTDVLSCSV 145
Query: 439 DKKSPE 456
D E
Sbjct: 146 DSLGKE 151
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 111 bits (268), Expect = 4e-26
Identities = 54/131 (41%), Positives = 85/131 (64%)
Frame = +1
Query: 79 SNINACQLVVDAVRTTLGPWGMDKLIVDHSGKAVISNDGATIMKLLDIVHPAAKTLVDIA 258
S+I A + V + VRT+LGP G+DK+++ G+ ++NDGATI+ +++ H AK LV ++
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLLVQLS 97
Query: 259 KSQDAEVGDGTTSVVILAGELLKRLRPFVEEGVHPRVIVRAVRTAAKLAVDKVKELAVKI 438
KSQD E+GDGTT VV+LAG LL++ +++G+HP I A ++AV + ++ +
Sbjct: 98 KSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAISDVV 157
Query: 439 DKKSPEEQREL 471
D SPE L
Sbjct: 158 D-FSPENTTNL 167
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 108 bits (259), Expect = 5e-25
Identities = 62/147 (42%), Positives = 89/147 (60%), Gaps = 1/147 (0%)
Frame = +1
Query: 13 MQPQILLLREGTDQTQCKPQLISNINACQLVVDAVRTTLGPWGMDKLIVDHS-GKAVISN 189
+ P + G + +L S + A V D V++TLGP GMDK++ +S G V++N
Sbjct: 3 LNPHQIFNESGIQERGENARLSSFVGAIA-VGDLVKSTLGPKGMDKILQSNSSGDIVVTN 61
Query: 190 DGATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEEGVHPRV 369
DGATI+K + + + AAK LV+I+K QD EVGDGTTSV + A ELL++ V +HP+V
Sbjct: 62 DGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQV 121
Query: 370 IVRAVRTAAKLAVDKVKELAVKIDKKS 450
I+ R A K A+D ++ A ID S
Sbjct: 122 IIDGYRIATKTAIDALR--ASSIDNSS 146
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 94.3 bits (224), Expect = 8e-21
Identities = 50/146 (34%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Frame = +1
Query: 31 LLREGTDQTQ-CKPQLISNINACQLVVDAVRTTLGPWGMDKLIVDHSGKAVISNDGATIM 207
L REG Q + +I N NA + + + RT+LGP G +K++V+H + ++ND ATI+
Sbjct: 13 LFREGYRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATII 72
Query: 208 KLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEEGVHPRVIVRAVR 387
+ L+++HPAAK +VD + Q+ E+GD VV+ GELL + + G+ P I +
Sbjct: 73 RELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYE 132
Query: 388 TAAKLAVDKVKEL-AVKIDKKSPEEQ 462
A ++ ++E+ A KI+ E++
Sbjct: 133 MALSHTMEVLEEICADKIETVESEKE 158
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 84.6 bits (200), Expect = 7e-18
Identities = 42/114 (36%), Positives = 65/114 (57%)
Frame = +1
Query: 31 LLREGTDQTQCKPQLISNINACQLVVDAVRTTLGPWGMDKLIVDHSGKAVISNDGATIMK 210
LL + Q L NI+A + D +++ LGP G K++VD +G ++ DG ++
Sbjct: 4 LLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLT 63
Query: 211 LLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEEGVHPRVI 372
+ I +P A + A +QD GDGTTSV +L GELLK+ ++ EG+HP +I
Sbjct: 64 EMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLI 117
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 48.0 bits (109), Expect = 7e-07
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Frame = +1
Query: 112 AVRTTLGPWGMDKLIVDHSGKAVISNDGATIMKLLDIVHP----AAKTLVDIAKSQDAEV 279
AV TLGP G + LI G I+ DG T+ + + + A+ + D+A +
Sbjct: 57 AVSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVA 116
Query: 280 GDGTTSVVILAGELLKRLRPFVEEGVHPRVIVRAVRTAAKLAVDKVKEL--AVKIDKKSP 453
GDGTT+ +L + V G +P + R + +LAVD V E A K D +
Sbjct: 117 GDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGI----QLAVDNVVEFLQANKRDITTS 172
Query: 454 EE 459
EE
Sbjct: 173 EE 174
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 31.9 bits (69), Expect = 0.051
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Frame = -1
Query: 416 TLSTANLAAVRTARTITLGW-----TPSSTNGLNLFRSSPAKITTDVVPSPTSAS*DLAM 252
TLST++ + T+ G T SST ++ S + + PTS+S D +
Sbjct: 496 TLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSS 555
Query: 251 STKVFAAG---CTISNSFMMVAPSF-EITALPL*STISLSMPHGPSVVRTASTTSWQALM 84
S ++G +I ++F V+ T+ P +++S+S S +AST+S ++
Sbjct: 556 SITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSIS 615
Query: 83 LDIS 72
IS
Sbjct: 616 SSIS 619
Score = 28.7 bits (61), Expect = 0.48
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Frame = -1
Query: 458 SSGDFLSIFTANSLTLSTANLAAVRTARTITLGWTPSSTNGLNLFRSSPAKITT---DVV 288
SS DF S T S +S++++ + ++ + L + SS + +L SS + +T
Sbjct: 549 SSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSAST 608
Query: 287 PSPTSAS*DLAMSTKVFAAGCTISNSFMMVAPS 189
SP+S S ++ S+ + ++ T S S +M++ S
Sbjct: 609 SSPSSISSSISSSSTILSSP-TPSTSSLMISSS 640
>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 551
Score = 30.7 bits (66), Expect = 0.12
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 394 QRYGRLER*L*DGPLLQQTASISSEVHQLRLQPM*YHHR 278
+R LE+ L + Q A + +V QL+L+P YHH+
Sbjct: 444 ERIQALEKQLGEKEAPSQVAGLKQQVEQLKLEPFKYHHQ 482
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 27.1 bits (57), Expect = 1.5
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -1
Query: 383 TARTITLGWTPSSTNGLNLFRSSPAKITTDVVPSPTSAS 267
T T+T G+T + T+ + + + TT V+ +PT+ +
Sbjct: 797 TVTTVTTGYTGTETSTVTVIPTGTTGTTTVVIQTPTTVT 835
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 3.4
Identities = 22/100 (22%), Positives = 38/100 (38%)
Frame = +1
Query: 46 TDQTQCKPQLISNINACQLVVDAVRTTLGPWGMDKLIVDHSGKAVISNDGATIMKLLDIV 225
T T + SN N+ LV D + P + + + N A+ + +L+
Sbjct: 218 TTSTNTSTVIPSNPNSVFLV-DCTHSQC-PTDLPNIATTQHSLRYLDNASASAITVLERT 275
Query: 226 HPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFV 345
HPAA + + S + D + + + K PFV
Sbjct: 276 HPAASSTMATESSHQSPSADSQAEELSKSQRVAKDDDPFV 315
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 3.4
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Frame = -1
Query: 350 SSTNGLNLFRSSPAKITTDVVPSPTSAS*DLAMSTKVFAAGCTISNSFMMVAPSFEITAL 171
SS+ G+ SS +K+T++ VPS S TK A TIS+S S T
Sbjct: 3661 SSSIGVGSSFSSNSKVTSNKVPSTVSPHSSSISDTK-SPATVTISSSSGQFTHSTFSTGS 3719
Query: 170 PL*STISLSMPHGPSVVRTASTTSWQALMLDIS*GLHWV*S-VPSLSNR 27
+ +T+S + S + T+ A D S + S VP LS +
Sbjct: 3720 TMHNTVSHATSTSSSFTTSHLPTNTLASTFDNSQSIFSSSSGVPGLSTK 3768
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 25.4 bits (53), Expect = 4.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 440 SIFTANSLTLSTANLAAVRTARTITLGWTPSSTNGL 333
SIFT L N+ +RT +LG T S NGL
Sbjct: 394 SIFTEYQLQELHENMGVMRTRMMRSLGETMSKYNGL 429
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 332 NLFRSSPAKITTDVVPSPTSAS*DLAMSTKVFAAGC 225
NLF + PA ++V+ + + + +A TK+F A C
Sbjct: 109 NLFYNEPAIELSNVINNSLAKNSGIAGPTKIFFANC 144
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 25.4 bits (53), Expect = 4.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 147 VHAPWAKCCADSINNQLAGIDVRYKLRL 64
VH+P AK + + N +GID+ ++L
Sbjct: 287 VHSPEAKVTENDVENVQSGIDIEKTIQL 314
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 5.9
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = -1
Query: 320 SSPAKITTDVVPSPTSAS*DLAMSTKVFAAGCTISNSFMMVAPSFEITALPL*STISLSM 141
SSP+ +T SP+S+S + S+ ++ + S+S + S ++ S+ S S
Sbjct: 142 SSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 201
Query: 140 PHGPSVVRTASTTS 99
S V S+TS
Sbjct: 202 SSSSSSVPITSSTS 215
>SPCC1259.07 |||transcriptional regulatory protein Rxt3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 351
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 378 SNDNSRMDPFFNKRPQSLQKFTS*DY 301
S DNS ++PF N+ P S F +Y
Sbjct: 176 SIDNSALEPFLNRYPASESLFPVTEY 201
>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1
Query: 473 RSSLCSSGDFLSIFTANSLTLSTAN 399
+SS+ S D LS+ ANS T+ST+N
Sbjct: 279 QSSIQPSDDPLSLEVANSETVSTSN 303
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 5.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 1 ARGKMQPQILLLREGTDQTQCKPQLISNINACQ 99
AR P+ L LR D QC Q ISN++ Q
Sbjct: 731 ARKNWLPKKLHLRRVNDTMQCVSQKISNLDKDQ 763
>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 410
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 106 VDAVRTTLGPWGMDKLIVDHSGKAVISND 192
+ +TT PW MD+ IV S +A I D
Sbjct: 170 IPVTQTTKKPWSMDENIVHCSYEAGILED 198
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 25 ILLLREGTDQTQCKPQLISNINACQLVVDAVRTTL 129
IL+L G+D+ + + +++C+ + D+V TTL
Sbjct: 681 ILILEMGSDKQFLRRAAVQLLDSCKHLPDSVITTL 715
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 24.6 bits (51), Expect = 7.8
Identities = 21/69 (30%), Positives = 26/69 (37%)
Frame = -1
Query: 473 RSSLCSSGDFLSIFTANSLTLSTANLAAVRTARTITLGWTPSSTNGLNLFRSSPAKITTD 294
R L S F ++ T S L A T L TP LN+ SS
Sbjct: 569 RKPLSSQNTFDTLPTI-SQGLLAATQPVTSVLNTSPLPKTPEKDRSLNVTPSSSTPTPAS 627
Query: 293 VVPSPTSAS 267
V+ P+SAS
Sbjct: 628 VLAPPSSAS 636
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,528
Number of Sequences: 5004
Number of extensions: 38577
Number of successful extensions: 136
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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