Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_A22
         (328 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   5.0  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   5.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.0  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    20   6.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   6.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   8.8  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 280 TTTATNFQNCSMTTGTTIEMNY 215
           TTTA+     S TT TTI   +
Sbjct: 381 TTTASPTTEPSTTTSTTISQKH 402


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 262 FQNCSMTTGTTIEMNYCPKNFHYSRYCSTLSLLFSFYALLI 140
           FQ    TT TTI      +  ++  YC     LFSF   ++
Sbjct: 123 FQLSFATTSTTIVSGAMAERCNFKAYC-----LFSFLNTIV 158


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 222  ISIVVPVVIEQFWKFVAVVVIVEL 293
            +++VVPVV       VAV+VI  L
Sbjct: 1585 LNLVVPVVAAILVIIVAVIVICVL 1608


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 208 KNFHYSRYCSTLSLLFSFYALLIS 137
           K FHY+RY +    +   +AL ++
Sbjct: 25  KEFHYNRYLTRRRRIEIAHALCLT 48


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 208 KNFHYSRYCSTLSLLFSFYALLIS 137
           K FHY+RY +    +   +AL ++
Sbjct: 287 KEFHYNRYLTRRRRIEIAHALCLT 310


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 4/6 (66%), Positives = 6/6 (100%)
 Frame = -1

Query: 322 ACCCYC 305
           +CCC+C
Sbjct: 10  SCCCWC 15


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,748
Number of Sequences: 438
Number of extensions: 762
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)