Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_A19
(493 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X72018-1|CAA50897.1| 570|Homo sapiens ORF protein. 63 4e-10
L32611-1|AAL31359.1| 691|Homo sapiens ribonucleoprotein protein. 63 4e-10
L03532-1|AAA36192.1| 729|Homo sapiens M4 protein protein. 63 4e-10
BC019580-1|AAH19580.1| 730|Homo sapiens heterogeneous nuclear r... 63 4e-10
BC000138-1|AAH00138.2| 730|Homo sapiens heterogeneous nuclear r... 63 4e-10
AF061832-1|AAC16002.1| 691|Homo sapiens M4 protein deletion mut... 63 4e-10
AB209733-1|BAD92970.1| 615|Homo sapiens heterogeneous nuclear r... 63 4e-10
AK023133-1|BAB14421.1| 576|Homo sapiens protein ( Homo sapiens ... 61 2e-09
AF106685-1|AAD43038.1| 547|Homo sapiens myelin gene expression ... 61 2e-09
AB037762-1|BAA92579.1| 620|Homo sapiens KIAA1341 protein protein. 61 2e-09
AK024089-1|BAB14822.1| 593|Homo sapiens protein ( Homo sapiens ... 33 0.41
BC028050-1|AAH28050.1| 634|Homo sapiens CREB regulated transcri... 31 1.6
BC023614-1|AAH23614.2| 604|Homo sapiens CRTC1 protein protein. 31 1.6
BC017075-1|AAH17075.2| 475|Homo sapiens CRTC1 protein protein. 31 1.6
AY360171-1|AAQ98856.1| 650|Homo sapiens transducer of regulated... 31 1.6
AY040323-1|AAK93832.1| 593|Homo sapiens mucoepidermoid suscepti... 31 1.6
AC006123-1|AAC97072.1| 414|Homo sapiens KIAA0616 protein protein. 31 1.6
AB014516-1|BAA31591.1| 634|Homo sapiens KIAA0616 protein protein. 31 1.6
Z85986-1|CAI19115.1| 164|Homo sapiens splicing factor, arginine... 31 2.2
Y08766-1|CAA70019.1| 638|Homo sapiens SF1-Bo isoform protein. 31 2.2
Y08765-1|CAA70018.1| 639|Homo sapiens SF1-Hl1 isoform protein. 31 2.2
L49380-1|AAB04033.1| 639|Homo sapiens transcription factor ZFM1... 31 2.2
L49345-1|AAB03514.1| 571|Homo sapiens transcription factor ZFM1... 31 2.2
L10838-1|AAA36648.1| 164|Homo sapiens pre-mRNA splicing factor ... 31 2.2
D26120-2|BAA05117.1| 623|Homo sapiens ZFM1 protein protein. 31 2.2
D26120-1|BAA05116.1| 548|Homo sapiens ZFM1 protein alternativel... 31 2.2
BT007017-1|AAP35663.1| 164|Homo sapiens splicing factor, argini... 31 2.2
BC069018-1|AAH69018.1| 164|Homo sapiens splicing factor, argini... 31 2.2
BC038446-1|AAH38446.1| 673|Homo sapiens SF1 protein protein. 31 2.2
BC020217-1|AAH20217.1| 548|Homo sapiens splicing factor 1 protein. 31 2.2
BC008724-1|AAH08724.1| 548|Homo sapiens splicing factor 1 protein. 31 2.2
BC008080-1|AAH08080.1| 548|Homo sapiens splicing factor 1 protein. 31 2.2
BC000914-1|AAH00914.1| 164|Homo sapiens splicing factor, argini... 31 2.2
AF107405-1|AAD44523.1| 164|Homo sapiens pre-mRNA splicing facto... 31 2.2
X52022-1|CAA36267.1| 3176|Homo sapiens collagen type VI, alpha 3... 30 3.8
BC104899-1|AAI04900.1| 825|Homo sapiens leucine-rich repeats an... 30 3.8
BC104897-1|AAI04898.1| 825|Homo sapiens leucine-rich repeats an... 30 3.8
AK057348-1|BAB71441.1| 825|Homo sapiens protein ( Homo sapiens ... 30 3.8
X84841-1|CAA59278.1| 437|Homo sapiens 68 kDa (U1) ribonucleopro... 30 5.0
X06812-1|CAA29961.1| 301|Homo sapiens protein ( Human mRNA for ... 30 5.0
X04654-1|CAA28352.1| 614|Homo sapiens protein ( Human mRNA for ... 30 5.0
M57939-2|AAA36573.1| 428|Homo sapiens ribonucleoprotein antigen... 30 5.0
M57939-1|AAA36572.1| 437|Homo sapiens ribonucleoprotein antigen... 30 5.0
M22636-1|AAA03001.1| 437|Homo sapiens protein ( Human U1 small ... 30 5.0
BC001315-1|AAH01315.1| 437|Homo sapiens small nuclear ribonucle... 30 5.0
CR456343-1|CAG30229.1| 309|Homo sapiens Em:AC002472.8 protein. 29 8.8
BC004346-1|AAH04346.1| 309|Homo sapiens THAP domain containing ... 29 8.8
>X72018-1|CAA50897.1| 570|Homo sapiens ORF protein.
Length = 570
Score = 63.3 bits (147), Expect = 4e-10
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Frame = +1
Query: 4 RGRGFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRGNMDKSEV-------KLPEGL 162
+ RG V ++ +EAVQAISMF+ Q L+DR M V+MD + K + +LP GL
Sbjct: 82 KSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGL 141
Query: 163 KSIGLGLGANGEPL 204
IG+GLG G+P+
Sbjct: 142 GGIGMGLGPGGQPI 155
>L32611-1|AAL31359.1| 691|Homo sapiens ribonucleoprotein protein.
Length = 691
Score = 63.3 bits (147), Expect = 4e-10
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Frame = +1
Query: 4 RGRGFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRGNMDKSEV-------KLPEGL 162
+ RG V ++ +EAVQAISMF+ Q L+DR M V+MD + K + +LP GL
Sbjct: 203 KSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGL 262
Query: 163 KSIGLGLGANGEPL 204
IG+GLG G+P+
Sbjct: 263 GGIGMGLGPGGQPI 276
>L03532-1|AAA36192.1| 729|Homo sapiens M4 protein protein.
Length = 729
Score = 63.3 bits (147), Expect = 4e-10
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Frame = +1
Query: 4 RGRGFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRGNMDKSEV-------KLPEGL 162
+ RG V ++ +EAVQAISMF+ Q L+DR M V+MD + K + +LP GL
Sbjct: 241 KSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGL 300
Query: 163 KSIGLGLGANGEPL 204
IG+GLG G+P+
Sbjct: 301 GGIGMGLGPGGQPI 314
>BC019580-1|AAH19580.1| 730|Homo sapiens heterogeneous nuclear
ribonucleoprotein M protein.
Length = 730
Score = 63.3 bits (147), Expect = 4e-10
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Frame = +1
Query: 4 RGRGFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRGNMDKSEV-------KLPEGL 162
+ RG V ++ +EAVQAISMF+ Q L+DR M V+MD + K + +LP GL
Sbjct: 242 KSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGL 301
Query: 163 KSIGLGLGANGEPL 204
IG+GLG G+P+
Sbjct: 302 GGIGMGLGPGGQPI 315
>BC000138-1|AAH00138.2| 730|Homo sapiens heterogeneous nuclear
ribonucleoprotein M protein.
Length = 730
Score = 63.3 bits (147), Expect = 4e-10
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Frame = +1
Query: 4 RGRGFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRGNMDKSEV-------KLPEGL 162
+ RG V ++ +EAVQAISMF+ Q L+DR M V+MD + K + +LP GL
Sbjct: 242 KSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGL 301
Query: 163 KSIGLGLGANGEPL 204
IG+GLG G+P+
Sbjct: 302 GGIGMGLGPGGQPI 315
>AF061832-1|AAC16002.1| 691|Homo sapiens M4 protein deletion mutant
protein.
Length = 691
Score = 63.3 bits (147), Expect = 4e-10
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Frame = +1
Query: 4 RGRGFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRGNMDKSEV-------KLPEGL 162
+ RG V ++ +EAVQAISMF+ Q L+DR M V+MD + K + +LP GL
Sbjct: 203 KSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGL 262
Query: 163 KSIGLGLGANGEPL 204
IG+GLG G+P+
Sbjct: 263 GGIGMGLGPGGQPI 276
>AB209733-1|BAD92970.1| 615|Homo sapiens heterogeneous nuclear
ribonucleoprotein M isoform a variant protein.
Length = 615
Score = 63.3 bits (147), Expect = 4e-10
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Frame = +1
Query: 4 RGRGFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRGNMDKSEV-------KLPEGL 162
+ RG V ++ +EAVQAISMF+ Q L+DR M V+MD + K + +LP GL
Sbjct: 142 KSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGL 201
Query: 163 KSIGLGLGANGEPL 204
IG+GLG G+P+
Sbjct: 202 GGIGMGLGPGGQPI 215
>AK023133-1|BAB14421.1| 576|Homo sapiens protein ( Homo sapiens
cDNA FLJ13071 fis, clone NT2RP3001792, moderately
similar to HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN M. ).
Length = 576
Score = 61.3 bits (142), Expect = 2e-09
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 8/75 (10%)
Frame = +1
Query: 4 RGRGFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRGNMDKSEVK--------LPEG 159
+ RG V ++ +EAVQAISMF+ Q L+DR M V+MD ++ E + LP G
Sbjct: 271 KSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMDDKSVPHEEYRSHDGKTPQLPRG 330
Query: 160 LKSIGLGLGANGEPL 204
L IG+GLG G+P+
Sbjct: 331 LGGIGMGLGPGGQPI 345
>AF106685-1|AAD43038.1| 547|Homo sapiens myelin gene expression
factor 2 protein.
Length = 547
Score = 61.3 bits (142), Expect = 2e-09
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 8/75 (10%)
Frame = +1
Query: 4 RGRGFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRGNMDKSEVK--------LPEG 159
+ RG V ++ +EAVQAISMF+ Q L+DR M V+MD ++ E + LP G
Sbjct: 218 KSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMDDKSVPHEEYRSPDGKTPQLPRG 277
Query: 160 LKSIGLGLGANGEPL 204
L IG+GLG G+P+
Sbjct: 278 LGGIGMGLGPGGQPI 292
>AB037762-1|BAA92579.1| 620|Homo sapiens KIAA1341 protein protein.
Length = 620
Score = 61.3 bits (142), Expect = 2e-09
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 8/75 (10%)
Frame = +1
Query: 4 RGRGFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRGNMDKSEVK--------LPEG 159
+ RG V ++ +EAVQAISMF+ Q L+DR M V+MD ++ E + LP G
Sbjct: 291 KSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMDDKSVPHEEYRSHDGKTPQLPRG 350
Query: 160 LKSIGLGLGANGEPL 204
L IG+GLG G+P+
Sbjct: 351 LGGIGMGLGPGGQPI 365
>AK024089-1|BAB14822.1| 593|Homo sapiens protein ( Homo sapiens
cDNA FLJ14027 fis, clone HEMBA1003827. ).
Length = 593
Score = 33.5 bits (73), Expect = 0.41
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 422 PKPVSPKACKLRLPPKA-LFVVKALADNPVPRPLKATLVPGTAPKTP 285
P P SP +RLPP L +L P P PL T VP + P++P
Sbjct: 380 PPPPSPPQAPVRLPPGGPLLPSASLTRGPQPPPLAVT-VPSSLPQSP 425
>BC028050-1|AAH28050.1| 634|Homo sapiens CREB regulated
transcription coactivator 1 protein.
Length = 634
Score = 31.5 bits (68), Expect = 1.6
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 422 PKPVSPKACKLRLPPKA-LFVVKALADNPVPRPLKATLVPGTAPKTP 285
P P P +RLPP L +L P P PL T VP + P++P
Sbjct: 380 PPPPPPPQAPVRLPPGGPLLPSASLTRGPQPPPLAVT-VPSSLPQSP 425
>BC023614-1|AAH23614.2| 604|Homo sapiens CRTC1 protein protein.
Length = 604
Score = 31.5 bits (68), Expect = 1.6
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 422 PKPVSPKACKLRLPPKA-LFVVKALADNPVPRPLKATLVPGTAPKTP 285
P P P +RLPP L +L P P PL T VP + P++P
Sbjct: 350 PPPPPPPQAPVRLPPGGPLLPSASLTRGPQPPPLAVT-VPSSLPQSP 395
>BC017075-1|AAH17075.2| 475|Homo sapiens CRTC1 protein protein.
Length = 475
Score = 31.5 bits (68), Expect = 1.6
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 422 PKPVSPKACKLRLPPKA-LFVVKALADNPVPRPLKATLVPGTAPKTP 285
P P P +RLPP L +L P P PL T VP + P++P
Sbjct: 221 PPPPPPPQAPVRLPPGGPLLPSASLTRGPQPPPLAVT-VPSSLPQSP 266
>AY360171-1|AAQ98856.1| 650|Homo sapiens transducer of regulated
CREB protein 1 protein.
Length = 650
Score = 31.5 bits (68), Expect = 1.6
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 422 PKPVSPKACKLRLPPKA-LFVVKALADNPVPRPLKATLVPGTAPKTP 285
P P P +RLPP L +L P P PL T VP + P++P
Sbjct: 396 PPPPPPPQAPVRLPPGGPLLPSASLTRGPQPPPLAVT-VPSSLPQSP 441
>AY040323-1|AAK93832.1| 593|Homo sapiens mucoepidermoid
susceptibility protein protein.
Length = 593
Score = 31.5 bits (68), Expect = 1.6
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 422 PKPVSPKACKLRLPPKA-LFVVKALADNPVPRPLKATLVPGTAPKTP 285
P P P +RLPP L +L P P PL T VP + P++P
Sbjct: 380 PPPPPPPQAPVRLPPGGPLLPSASLTRGPQPPPLAVT-VPSSLPQSP 425
>AC006123-1|AAC97072.1| 414|Homo sapiens KIAA0616 protein protein.
Length = 414
Score = 31.5 bits (68), Expect = 1.6
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 422 PKPVSPKACKLRLPPKA-LFVVKALADNPVPRPLKATLVPGTAPKTP 285
P P P +RLPP L +L P P PL T VP + P++P
Sbjct: 354 PPPPPPPQAPVRLPPGGPLLPSASLTRGPQPPPLAVT-VPSSLPQSP 399
>AB014516-1|BAA31591.1| 634|Homo sapiens KIAA0616 protein protein.
Length = 634
Score = 31.5 bits (68), Expect = 1.6
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 422 PKPVSPKACKLRLPPKA-LFVVKALADNPVPRPLKATLVPGTAPKTP 285
P P P +RLPP L +L P P PL T VP + P++P
Sbjct: 380 PPPPPPPQAPVRLPPGGPLLPSASLTRGPQPPPLAVT-VPSSLPQSP 425
>Z85986-1|CAI19115.1| 164|Homo sapiens splicing factor,
arginine/serine-rich 3 protein.
Length = 164
Score = 31.1 bits (67), Expect = 2.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 13 GFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRG 123
GFA VE++ P +A A+ D +TL R+ V + G
Sbjct: 47 GFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 83
>Y08766-1|CAA70019.1| 638|Homo sapiens SF1-Bo isoform protein.
Length = 638
Score = 31.1 bits (67), Expect = 2.2
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 431 CRAPKPVSPKAC--KLRLPPKALFVVKALADNPVPRPLKATLVPGTAPKTPAP 279
C+ +P P++ K R+ + L ++ L + PVP + +T P T P AP
Sbjct: 292 CKFQRPGDPQSAQDKARMDKEYLSLMAELGEAPVPASVGSTSGPATTPLASAP 344
>Y08765-1|CAA70018.1| 639|Homo sapiens SF1-Hl1 isoform protein.
Length = 639
Score = 31.1 bits (67), Expect = 2.2
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 431 CRAPKPVSPKAC--KLRLPPKALFVVKALADNPVPRPLKATLVPGTAPKTPAP 279
C+ +P P++ K R+ + L ++ L + PVP + +T P T P AP
Sbjct: 292 CKFQRPGDPQSAQDKARMDKEYLSLMAELGEAPVPASVGSTSGPATTPLASAP 344
>L49380-1|AAB04033.1| 639|Homo sapiens transcription factor ZFM1
protein.
Length = 639
Score = 31.1 bits (67), Expect = 2.2
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 431 CRAPKPVSPKAC--KLRLPPKALFVVKALADNPVPRPLKATLVPGTAPKTPAP 279
C+ +P P++ K R+ + L ++ L + PVP + +T P T P AP
Sbjct: 292 CKFQRPGDPQSAQDKARMDKEYLSLMAELGEAPVPASVGSTSGPATTPLASAP 344
>L49345-1|AAB03514.1| 571|Homo sapiens transcription factor ZFM1
protein.
Length = 571
Score = 31.1 bits (67), Expect = 2.2
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 431 CRAPKPVSPKAC--KLRLPPKALFVVKALADNPVPRPLKATLVPGTAPKTPAP 279
C+ +P P++ K R+ + L ++ L + PVP + +T P T P AP
Sbjct: 292 CKFQRPGDPQSAQDKARMDKEYLSLMAELGEAPVPASVGSTSGPATTPLASAP 344
>L10838-1|AAA36648.1| 164|Homo sapiens pre-mRNA splicing factor
protein.
Length = 164
Score = 31.1 bits (67), Expect = 2.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 13 GFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRG 123
GFA VE++ P +A A+ D +TL R+ V + G
Sbjct: 47 GFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 83
>D26120-2|BAA05117.1| 623|Homo sapiens ZFM1 protein protein.
Length = 623
Score = 31.1 bits (67), Expect = 2.2
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 431 CRAPKPVSPKAC--KLRLPPKALFVVKALADNPVPRPLKATLVPGTAPKTPAP 279
C+ +P P++ K R+ + L ++ L + PVP + +T P T P AP
Sbjct: 292 CKFQRPGDPQSAQDKARMDKEYLSLMAELGEAPVPASVGSTSGPATTPLASAP 344
>D26120-1|BAA05116.1| 548|Homo sapiens ZFM1 protein alternatively
spliced product protein.
Length = 548
Score = 31.1 bits (67), Expect = 2.2
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 431 CRAPKPVSPKAC--KLRLPPKALFVVKALADNPVPRPLKATLVPGTAPKTPAP 279
C+ +P P++ K R+ + L ++ L + PVP + +T P T P AP
Sbjct: 292 CKFQRPGDPQSAQDKARMDKEYLSLMAELGEAPVPASVGSTSGPATTPLASAP 344
>BT007017-1|AAP35663.1| 164|Homo sapiens splicing factor,
arginine/serine-rich 3 protein.
Length = 164
Score = 31.1 bits (67), Expect = 2.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 13 GFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRG 123
GFA VE++ P +A A+ D +TL R+ V + G
Sbjct: 47 GFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 83
>BC069018-1|AAH69018.1| 164|Homo sapiens splicing factor,
arginine/serine-rich 3 protein.
Length = 164
Score = 31.1 bits (67), Expect = 2.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 13 GFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRG 123
GFA VE++ P +A A+ D +TL R+ V + G
Sbjct: 47 GFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 83
>BC038446-1|AAH38446.1| 673|Homo sapiens SF1 protein protein.
Length = 673
Score = 31.1 bits (67), Expect = 2.2
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 431 CRAPKPVSPKAC--KLRLPPKALFVVKALADNPVPRPLKATLVPGTAPKTPAP 279
C+ +P P++ K R+ + L ++ L + PVP + +T P T P AP
Sbjct: 417 CKFQRPGDPQSAQDKARMDKEYLSLMAELGEAPVPASVGSTSGPATTPLASAP 469
>BC020217-1|AAH20217.1| 548|Homo sapiens splicing factor 1 protein.
Length = 548
Score = 31.1 bits (67), Expect = 2.2
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 431 CRAPKPVSPKAC--KLRLPPKALFVVKALADNPVPRPLKATLVPGTAPKTPAP 279
C+ +P P++ K R+ + L ++ L + PVP + +T P T P AP
Sbjct: 292 CKFQRPGDPQSAQDKARMDKEYLSLMAELGEAPVPASVGSTSGPATTPLASAP 344
>BC008724-1|AAH08724.1| 548|Homo sapiens splicing factor 1 protein.
Length = 548
Score = 31.1 bits (67), Expect = 2.2
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 431 CRAPKPVSPKAC--KLRLPPKALFVVKALADNPVPRPLKATLVPGTAPKTPAP 279
C+ +P P++ K R+ + L ++ L + PVP + +T P T P AP
Sbjct: 292 CKFQRPGDPQSAQDKARMDKEYLSLMAELGEAPVPASVGSTSGPATTPLASAP 344
>BC008080-1|AAH08080.1| 548|Homo sapiens splicing factor 1 protein.
Length = 548
Score = 31.1 bits (67), Expect = 2.2
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 431 CRAPKPVSPKAC--KLRLPPKALFVVKALADNPVPRPLKATLVPGTAPKTPAP 279
C+ +P P++ K R+ + L ++ L + PVP + +T P T P AP
Sbjct: 292 CKFQRPGDPQSAQDKARMDKEYLSLMAELGEAPVPASVGSTSGPATTPLASAP 344
>BC000914-1|AAH00914.1| 164|Homo sapiens splicing factor,
arginine/serine-rich 3 protein.
Length = 164
Score = 31.1 bits (67), Expect = 2.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 13 GFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRG 123
GFA VE++ P +A A+ D +TL R+ V + G
Sbjct: 47 GFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 83
>AF107405-1|AAD44523.1| 164|Homo sapiens pre-mRNA splicing factor
protein.
Length = 164
Score = 31.1 bits (67), Expect = 2.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 13 GFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRG 123
GFA VE++ P +A A+ D +TL R+ V + G
Sbjct: 47 GFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 83
>X52022-1|CAA36267.1| 3176|Homo sapiens collagen type VI, alpha 3
chain protein.
Length = 3176
Score = 30.3 bits (65), Expect = 3.8
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = -3
Query: 488 AERTVAKSLAVQPCCRSWFCRAPKPVSPKACKLRLPPKALFVVKALADNP-VPRPLKATL 312
A+ K+ V+P A KPV+ K +R PP A K +A P VPRP +A
Sbjct: 2920 AKPVATKTATVRPPVAVKPATAAKPVAAKPAAVR-PPAA--AAKPVATKPEVPRP-QAAK 2975
Query: 311 VPGTAPKTPAPI 276
T P T P+
Sbjct: 2976 PAATKPATTKPV 2987
>BC104899-1|AAI04900.1| 825|Homo sapiens leucine-rich repeats and
guanylate kinase domain containing protein.
Length = 825
Score = 30.3 bits (65), Expect = 3.8
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 192 WRAFARCCEEFTTDYNPYKFELGKPHAI-YGCWCFRSSPWN 311
W++F C + F + PY + GK + C FR PW+
Sbjct: 712 WKSFDLCEDYFKPPFGPYPEKSGKDSLVSMKCSLFRFCPWS 752
>BC104897-1|AAI04898.1| 825|Homo sapiens leucine-rich repeats and
guanylate kinase domain containing protein.
Length = 825
Score = 30.3 bits (65), Expect = 3.8
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 192 WRAFARCCEEFTTDYNPYKFELGKPHAI-YGCWCFRSSPWN 311
W++F C + F + PY + GK + C FR PW+
Sbjct: 712 WKSFDLCEDYFKPPFGPYPEKSGKDSLVSMKCSLFRFCPWS 752
>AK057348-1|BAB71441.1| 825|Homo sapiens protein ( Homo sapiens
cDNA FLJ32786 fis, clone TESTI2002256, weakly similar to
GUANYLATE KINASE (EC 2.7.4.8). ).
Length = 825
Score = 30.3 bits (65), Expect = 3.8
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 192 WRAFARCCEEFTTDYNPYKFELGKPHAI-YGCWCFRSSPWN 311
W++F C + F + PY + GK + C FR PW+
Sbjct: 712 WKSFDLCEDYFKPPFGPYPEKSGKDSLVSMKCSLFRFCPWS 752
>X84841-1|CAA59278.1| 437|Homo sapiens 68 kDa (U1)
ribonucleoprotein protein.
Length = 437
Score = 29.9 bits (64), Expect = 5.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 10 RGFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRGNMDK 135
RG+A +EY+H + A D + + RR+ V ++RG K
Sbjct: 144 RGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVK 185
>X06812-1|CAA29961.1| 301|Homo sapiens protein ( Human mRNA for
hU1-70K snRNP protein (RNP8). ).
Length = 301
Score = 29.9 bits (64), Expect = 5.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 10 RGFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRGNMDK 135
RG+A +EY+H + A D + + RR+ V ++RG K
Sbjct: 95 RGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVK 136
>X04654-1|CAA28352.1| 614|Homo sapiens protein ( Human mRNA for U1
RNA-associated 70K protein. ).
Length = 614
Score = 29.9 bits (64), Expect = 5.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 10 RGFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRGNMDK 135
RG+A +EY+H + A D + + RR+ V ++RG K
Sbjct: 321 RGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVK 362
>M57939-2|AAA36573.1| 428|Homo sapiens ribonucleoprotein antigen
protein.
Length = 428
Score = 29.9 bits (64), Expect = 5.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 10 RGFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRGNMDK 135
RG+A +EY+H + A D + + RR+ V ++RG K
Sbjct: 144 RGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVK 185
>M57939-1|AAA36572.1| 437|Homo sapiens ribonucleoprotein antigen
protein.
Length = 437
Score = 29.9 bits (64), Expect = 5.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 10 RGFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRGNMDK 135
RG+A +EY+H + A D + + RR+ V ++RG K
Sbjct: 144 RGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVK 185
>M22636-1|AAA03001.1| 437|Homo sapiens protein ( Human U1 small
nuclear ribonucleoprotein 70 kd protein mRNA, complete
cds. ).
Length = 437
Score = 29.9 bits (64), Expect = 5.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 10 RGFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRGNMDK 135
RG+A +EY+H + A D + + RR+ V ++RG K
Sbjct: 144 RGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVK 185
>BC001315-1|AAH01315.1| 437|Homo sapiens small nuclear
ribonucleoprotein 70kDa polypeptide (RNP antigen)
protein.
Length = 437
Score = 29.9 bits (64), Expect = 5.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 10 RGFAVVEYDHPVEAVQAISMFDKQTLYDRRMTVRMDRGNMDK 135
RG+A +EY+H + A D + + RR+ V ++RG K
Sbjct: 144 RGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVK 185
>CR456343-1|CAG30229.1| 309|Homo sapiens Em:AC002472.8 protein.
Length = 309
Score = 29.1 bits (62), Expect = 8.8
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -3
Query: 422 PKPVSPKACKLRLPPKA 372
P+PVSP A LRLPP A
Sbjct: 206 PRPVSPSAYMLRLPPPA 222
>BC004346-1|AAH04346.1| 309|Homo sapiens THAP domain containing 7
protein.
Length = 309
Score = 29.1 bits (62), Expect = 8.8
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -3
Query: 422 PKPVSPKACKLRLPPKA 372
P+PVSP A LRLPP A
Sbjct: 206 PRPVSPSAYMLRLPPPA 222
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.315 0.132 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,980,356
Number of Sequences: 237096
Number of extensions: 1649151
Number of successful extensions: 3196
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 3051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3186
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4423060356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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