Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_A19
         (493 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   0.76 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   1.3  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   2.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   2.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 61   ISMFDKQTLYDRRMTVRMDRGNMDKSEVKLPEGLKSIGLGLGANG 195
            I+   +Q    +  TVRM    +    + L  G K++G+G+  +G
Sbjct: 1178 IASTQQQQQSQQAQTVRMVTAQLAGKPIVLASGNKNVGVGVSNSG 1222


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = -3

Query: 491 CAERTVAKSLAVQPCCRSWFCRAPKPVSPKACKLRLPPKALFVVKALAD 345
           C   T    + V  C R W   + K    K  KL  PP A+F+     D
Sbjct: 242 CDGLTSVFRIQVDECDRLWILDSGKVDIAKGGKLACPP-AIFIFDLTTD 289


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 416 PVSPKACKLRLPPKALFVVKALADNPVPRPLKATLVPG 303
           P  P    LRLP + ++ +  +   PV R     L PG
Sbjct: 181 PTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPG 218


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 416 PVSPKACKLRLPPKALFVVKALADNPVPRPLKATLVPG 303
           P  P    LRLP + ++ +  +   PV R     L PG
Sbjct: 238 PTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPG 275


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 449 CCRSWFCRAP 420
           CCRSW  + P
Sbjct: 400 CCRSWLSKFP 409


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 449 CCRSWFCRAP 420
           CCRSW  + P
Sbjct: 400 CCRSWLSKFP 409


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 416 PVSPKACKLRLPPKALFVVKALADNPVPRPLKATLVPG 303
           P  P    LRLP + ++ +  +   PV R     L PG
Sbjct: 238 PSRPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG 275


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 319  AFNGLGTGLSASALTT 366
            A+NG+GTG  +  L T
Sbjct: 1439 AYNGIGTGDPSDMLNT 1454



 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 319 AFNGLGTGLSA 351
           A NG+G GLSA
Sbjct: 757 AVNGIGAGLSA 767


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = -3

Query: 461 AVQPCCRSWFCRAPKPV 411
           +++   + W CR P+P+
Sbjct: 479 SIRGAIQQWTCRQPEPL 495


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 206 RKGSPLAPNPKPILLRPSGS 147
           RK   L+PN K I + P GS
Sbjct: 225 RKLKELSPNIKIIAVDPKGS 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.132    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,493
Number of Sequences: 438
Number of extensions: 2784
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)