Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_A15
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    26   0.22 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.7  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -1

Query: 473 FVFLLFFDGGNAFMHLMLLTFYILITPVIALAVARAMLLPASTLPVKAIA 324
           F +L + +GG AF+    LT  +   P+  + +A   +L    L V  IA
Sbjct: 7   FPYLCYKNGGGAFLIPYFLTLVLAGIPMFFMELALGQMLTVGGLGVFKIA 56


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = -1

Query: 473 FVFLLFFDGGNAFMHLMLLTFYILITPVIALAVARAMLLPASTLPVKAIA 324
           F +L + +GG AFM    +   +   P+  + ++   ++    L V  IA
Sbjct: 45  FPYLCYKNGGGAFMVPYFIALALAGVPMFLMELSLGQMMTIGGLGVFKIA 94


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = -1

Query: 473 FVFLLFFDGGNAFMHLMLLTFYILITPVIALAVARAMLLPASTLPVKAIA 324
           F +L + +GG AFM    +   +   P+  + ++   ++    L V  IA
Sbjct: 98  FPYLCYKNGGGAFMVPYFIALALAGVPMFLMELSLGQMMTIGGLGVFKIA 147


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +1

Query: 220 NFLTGIVLWTGKGLWLLAKLGFAATGIVAGSLAASAMAFTG 342
           N L  + ++T +GL  +  L  A+  I    +    M F G
Sbjct: 43  NILVCVAIYTDRGLRRIGNLFLASLAIADLFVGCLVMTFAG 83



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 129 LRLSKYYHIKDSIR 170
           + L +Y HIKD +R
Sbjct: 119 ISLDRYIHIKDPLR 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,632
Number of Sequences: 438
Number of extensions: 3413
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)