Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_A13
(176 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X69150-1|CAB56794.1| 152|Homo sapiens ribosomal protein S18 pro... 53 1e-07
BC106063-1|AAI06064.1| 152|Homo sapiens ribosomal protein S18 p... 53 1e-07
BC101788-1|AAI01789.1| 152|Homo sapiens ribosomal protein S18 p... 53 1e-07
BC101786-1|AAI01787.1| 152|Homo sapiens ribosomal protein S18 p... 53 1e-07
AL844527-17|CAI41848.1| 152|Homo sapiens ribosomal protein S18 ... 53 1e-07
AL713971-5|CAI17656.1| 152|Homo sapiens ribosomal protein S18 p... 53 1e-07
AL662827-19|CAI17530.1| 152|Homo sapiens ribosomal protein S18 ... 53 1e-07
AL662820-19|CAI18127.1| 152|Homo sapiens ribosomal protein S18 ... 53 1e-07
AL645940-16|CAI18076.1| 152|Homo sapiens ribosomal protein S18 ... 53 1e-07
AL031228-3|CAA20231.1| 152|Homo sapiens ribosomal protein S18 p... 53 1e-07
BX248408-4|CAM26259.1| 34|Homo sapiens ribosomal protein S18 p... 38 0.008
AY536376-1|AAT66049.1| 34|Homo sapiens rhabdomyosarcoma antige... 38 0.008
BC060851-1|AAH60851.1| 742|Homo sapiens LOC401010 protein protein. 28 6.2
>X69150-1|CAB56794.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/36 (61%), Positives = 31/36 (86%)
Frame = +3
Query: 69 FSIILRIMNTNIDAKRKVMCAMTAIKGLGRRYSNIV 176
F ILR++NTNID +RK+ A+TAIKG+GRRY+++V
Sbjct: 9 FQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVV 44
>BC106063-1|AAI06064.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/36 (61%), Positives = 31/36 (86%)
Frame = +3
Query: 69 FSIILRIMNTNIDAKRKVMCAMTAIKGLGRRYSNIV 176
F ILR++NTNID +RK+ A+TAIKG+GRRY+++V
Sbjct: 9 FQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVV 44
>BC101788-1|AAI01789.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/36 (61%), Positives = 31/36 (86%)
Frame = +3
Query: 69 FSIILRIMNTNIDAKRKVMCAMTAIKGLGRRYSNIV 176
F ILR++NTNID +RK+ A+TAIKG+GRRY+++V
Sbjct: 9 FQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVV 44
>BC101786-1|AAI01787.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/36 (61%), Positives = 31/36 (86%)
Frame = +3
Query: 69 FSIILRIMNTNIDAKRKVMCAMTAIKGLGRRYSNIV 176
F ILR++NTNID +RK+ A+TAIKG+GRRY+++V
Sbjct: 9 FQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVV 44
>AL844527-17|CAI41848.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/36 (61%), Positives = 31/36 (86%)
Frame = +3
Query: 69 FSIILRIMNTNIDAKRKVMCAMTAIKGLGRRYSNIV 176
F ILR++NTNID +RK+ A+TAIKG+GRRY+++V
Sbjct: 9 FQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVV 44
>AL713971-5|CAI17656.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/36 (61%), Positives = 31/36 (86%)
Frame = +3
Query: 69 FSIILRIMNTNIDAKRKVMCAMTAIKGLGRRYSNIV 176
F ILR++NTNID +RK+ A+TAIKG+GRRY+++V
Sbjct: 9 FQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVV 44
>AL662827-19|CAI17530.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/36 (61%), Positives = 31/36 (86%)
Frame = +3
Query: 69 FSIILRIMNTNIDAKRKVMCAMTAIKGLGRRYSNIV 176
F ILR++NTNID +RK+ A+TAIKG+GRRY+++V
Sbjct: 9 FQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVV 44
>AL662820-19|CAI18127.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/36 (61%), Positives = 31/36 (86%)
Frame = +3
Query: 69 FSIILRIMNTNIDAKRKVMCAMTAIKGLGRRYSNIV 176
F ILR++NTNID +RK+ A+TAIKG+GRRY+++V
Sbjct: 9 FQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVV 44
>AL645940-16|CAI18076.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/36 (61%), Positives = 31/36 (86%)
Frame = +3
Query: 69 FSIILRIMNTNIDAKRKVMCAMTAIKGLGRRYSNIV 176
F ILR++NTNID +RK+ A+TAIKG+GRRY+++V
Sbjct: 9 FQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVV 44
>AL031228-3|CAA20231.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/36 (61%), Positives = 31/36 (86%)
Frame = +3
Query: 69 FSIILRIMNTNIDAKRKVMCAMTAIKGLGRRYSNIV 176
F ILR++NTNID +RK+ A+TAIKG+GRRY+++V
Sbjct: 9 FQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVV 44
>BX248408-4|CAM26259.1| 34|Homo sapiens ribosomal protein S18
protein.
Length = 34
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +3
Query: 69 FSIILRIMNTNIDAKRKVMCAMTAIK 146
F ILR++NTNID +RK+ A+TAIK
Sbjct: 9 FQHILRVLNTNIDGRRKIAFAITAIK 34
>AY536376-1|AAT66049.1| 34|Homo sapiens rhabdomyosarcoma antigen
MU-RMS-40.21 protein.
Length = 34
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +3
Query: 69 FSIILRIMNTNIDAKRKVMCAMTAIK 146
F ILR++NTNID +RK+ A+TAIK
Sbjct: 9 FQHILRVLNTNIDGRRKIAFAITAIK 34
>BC060851-1|AAH60851.1| 742|Homo sapiens LOC401010 protein protein.
Length = 742
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 33 KLPKCLL*SQTNFSIILRIMNTNIDAK 113
K P C+ NFS+IL++ N N+ K
Sbjct: 483 KKPGCMSSKPINFSVILKLSNVNLQEK 509
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,105,387
Number of Sequences: 237096
Number of extensions: 249181
Number of successful extensions: 553
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 76,859,062
effective HSP length: 38
effective length of database: 67,849,414
effective search space used: 1356988280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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