Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_A13
         (176 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   1.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   3.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   4.2  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 92  HDTKNDAEICLGSQETFW 39
           ++++N    CLGS ET++
Sbjct: 370 NESENRRNSCLGSTETYY 387


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 160 RRPSPLIAVIAH 125
           R+P PLI +I H
Sbjct: 490 RQPEPLIELIEH 501


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -1

Query: 107 INVRIHDTKNDAEICLGSQETFWQFEFTL 21
           +N+R   + + + I    +  FWQ + TL
Sbjct: 365 LNLRTDISSSSSSISSSEENDFWQPKPTL 393



 Score = 19.4 bits (38), Expect = 4.2
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 77   DAEICLGSQ 51
            D E+C+GSQ
Sbjct: 1238 DYEVCIGSQ 1246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,640
Number of Sequences: 438
Number of extensions: 398
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 38
effective length of database: 129,699
effective search space used:  2593980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)