Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_A12
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    27   0.082

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 27.1 bits (57), Expect = 0.082
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
 Frame = +3

Query: 156 ETQNVKSQE-NKTGEQQKSNGLVRPNDRNSXXXXXXXXXXXTQNGTIEN--KDGVGRPAR 326
           + QN   Q  N+  + ++++     N +N             QNG  +N  K    +   
Sbjct: 448 DNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNG 507

Query: 327 REFNDRRPNFERRNFNDNPEGAERR 401
              ND + N  R+N N N +    R
Sbjct: 508 NRQNDNKRNGNRQNDNQNNQNDNNR 532



 Score = 27.1 bits (57), Expect = 0.082
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
 Frame = +3

Query: 153 NETQNVKSQENKTGEQQKSNGLVRPNDRNSXXXXXXXXXXXTQNGTIEN--KDGVGRPAR 326
           N+    +  +N+  + +++      N +N             QNG  +N  K    R   
Sbjct: 453 NKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQND 512

Query: 327 REFNDRRPNFERRNFNDN 380
            + N  R N  + N NDN
Sbjct: 513 NKRNGNRQNDNQNNQNDN 530


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,764
Number of Sequences: 438
Number of extensions: 1383
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)