Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_A08
         (124 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    24   2.4  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    23   7.4  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    22   9.7  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    22   9.7  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    22   9.7  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 38   SVYYKYTISNNGVPTYSDGRISYRRH 115
            SVY+  T+ + G+ T  D +I  RRH
Sbjct: 1476 SVYWLLTLLHAGLQTNQDLKIYLRRH 1501


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = -3

Query: 77  EPRCWISYICSIRNCQRDSATLSP 6
           E  CW+S  C +  C  ++    P
Sbjct: 367 EDECWLSTDCKVPTCYIEAIMYRP 390


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 57   RYPTTGFLLTRTDEYLTDVIRE 122
            RY  +   L R  EYL  V+RE
Sbjct: 1179 RYVPSAVHLVRRGEYLLSVVRE 1200


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 19  ALSRWQFRILQIYDIQQRGSYLL 87
           AL R+  RI  +YD   +GS LL
Sbjct: 539 ALERFNRRIRLLYDSLPKGSLLL 561


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 68  NGVPTYSDGRI 100
           NG P+YSDG +
Sbjct: 689 NGYPSYSDGNV 699


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 532,424
Number of Sequences: 5004
Number of extensions: 6507
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 21
effective length of database: 2,257,394
effective search space used: 42890486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)