Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_A08
         (124 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   0.15 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   0.15 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   1.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   3.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          19   5.5  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 0.15
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 57  RYPTTGFLLTRTDEYLTD 110
           RY T GFL T + ++LTD
Sbjct: 196 RYTTEGFLTTCSFDFLTD 213


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 0.15
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 57  RYPTTGFLLTRTDEYLTD 110
           RY T GFL T + ++LTD
Sbjct: 196 RYTTEGFLTTCSFDFLTD 213


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 35  NSVYYKYTISNNGVPTYSDGRISY 106
           +S  +  T  N  V  Y DGR+ Y
Sbjct: 97  HSYLHTITSPNKFVRLYQDGRVLY 120


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 57  RYPTTGFLLTRTDEYLTD 110
           R+   GFL + + +YLTD
Sbjct: 187 RFVPEGFLTSCSFDYLTD 204


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 84  TRTDEYLTDVIRE 122
           TRTD Y  +++ E
Sbjct: 301 TRTDAYTVEIVLE 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,090
Number of Sequences: 438
Number of extensions: 402
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 21
effective length of database: 137,145
effective search space used:  2605755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)