Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_A07
         (307 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...    67   5e-13
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...    67   5e-13
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    29   0.15 
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    25   1.9  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   2.5  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    25   2.5  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    24   4.4  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 67.3 bits (157), Expect = 5e-13
 Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
 Frame = +1

Query: 25  ETEKAFQKQATVFLNRNGGHEKEGYETF*EMLVYVSRHPVRPLKAHTLISKCPFTGNVSI 204
           ++E+AFQKQ  +F N   G  +  Y+     +    + P   +    +  KCPF G VSI
Sbjct: 8   QSERAFQKQPHIFQNAKKGAGRRWYKD----VGLGFKTPAEAIYGEYVDKKCPFVGQVSI 63

Query: 205 RGRI*Q-RCSENENARTIVIRRDYLHYLAKYNRFE 306
           RGRI        +  RTI+IRR+YLH++ KYNR+E
Sbjct: 64  RGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYE 98


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 67.3 bits (157), Expect = 5e-13
 Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
 Frame = +1

Query: 25  ETEKAFQKQATVFLNRNGGHEKEGYETF*EMLVYVSRHPVRPLKAHTLISKCPFTGNVSI 204
           ++E+AFQKQ  +F N   G  +  Y+     +    + P   +    +  KCPF G VSI
Sbjct: 8   QSERAFQKQPHIFQNAKKGAGRRWYKD----VGLGFKTPAEAIYGEYVDKKCPFVGQVSI 63

Query: 205 RGRI*Q-RCSENENARTIVIRRDYLHYLAKYNRFE 306
           RGRI        +  RTI+IRR+YLH++ KYNR+E
Sbjct: 64  RGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYE 98


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 29.1 bits (62), Expect = 0.15
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 127 VSRHPVRPLKAHTLISKCPFTGNVSIRGRI*QRCSEN 237
           +SR P R L  H  ++   +    SI  R+ +RC+ N
Sbjct: 63  ISRKPTRKLVHHISLNNVSYASKASITSRLLRRCATN 99


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 179 VHSRVTCPSEAVSDSVVQKMKMREQLLSGAIISITWLNTTDL 304
           + + V  P E+  +SV + +    +LLSG   ++T L TT L
Sbjct: 144 IFNAVNSPDESFRESVFRTITSLPRLLSGQDSAVTPLFTTGL 185


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 108 LRNVGLRFKTPREAVEGTYIDKQMSIHG*R 197
           +R++G RF  PRE  + T ID  + I+G R
Sbjct: 288 VRSIG-RFPGPREGHQATTIDDTVYIYGGR 316


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 54  DGVPQSQWGA*KGRI*DILRNVGLRFKTPREAV 152
           DG+P  Q    + +  + + NVGLR K P+ A+
Sbjct: 33  DGIPLDQEEIQRSKGCNFIINVGLRLKLPQTAL 65


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 203 SEAVSDSVVQKMKMREQLLSGAIISI 280
           + A SD  VQK  + + +  GA+ISI
Sbjct: 510 ANAKSDEEVQKPSVSKNIADGAVISI 535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,334,113
Number of Sequences: 5004
Number of extensions: 25369
Number of successful extensions: 42
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)