Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_A07
         (307 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   2.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   2.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   2.6  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   4.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   4.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   4.5  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    20   6.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   6.0  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 86  KRKDMRHSKKCWSTFQDT 139
           K +D+R+ K C S ++D+
Sbjct: 486 KLEDLRNKKSCHSGYKDS 503


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 86  KRKDMRHSKKCWSTFQDT 139
           K +D+R+ K C S ++D+
Sbjct: 486 KLEDLRNKKSCHSGYKDS 503


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 86  KRKDMRHSKKCWSTFQDT 139
           K +D+R+ K C S ++D+
Sbjct: 486 KLEDLRNKKSCHSGYKDS 503


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 16  GGSETEKAFQKQATVFLNRNG 78
           GG+  E   ++ A +FL+ NG
Sbjct: 76  GGNFNEVVIREIAEIFLDENG 96


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 249 NNCYQARLSPLPG 287
           N+CYQ R    PG
Sbjct: 97  NSCYQERYEYFPG 109


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 249 NNCYQARLSPLPG 287
           N+CYQ R    PG
Sbjct: 97  NSCYQERYEYFPG 109


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
          protein.
          Length = 74

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = -1

Query: 91 PFHAPHCD 68
          P+H  HCD
Sbjct: 37 PYHCSHCD 44


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 111 RNVGLRFKTPRE 146
           RN GLR++ P++
Sbjct: 424 RNAGLRYRGPKQ 435


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,449
Number of Sequences: 438
Number of extensions: 2173
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)