Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_A05
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   1.2  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    24   8.8  
SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae Q0...    24   8.8  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    24   8.8  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 31   SLEFFYIVFLTKIISLFKILPNIKNPFSV 117
            S   +YI+ L KI   F I+ N++N FSV
Sbjct: 2035 SFRKYYILELLKISESFLIVDNLQNAFSV 2063


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 361  NTQYI**SA-KDTKLIFE*IRNKIILCSKSFLHLNKLINRRFWLY 230
            +T Y+  +A + T+ +FE   ++    + + L LNK I+RR W +
Sbjct: 887  DTNYVAQNAGRITRALFEIAMSRTWASAFTILSLNKSIDRRQWSF 931


>SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae
           Q0080|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 48

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 293 YFIPYLFKYQFSVFCTSLYILSVYTL 370
           YFI  L  + F +F   LYI SVY L
Sbjct: 8   YFINIL-SFGFLIFTVLLYISSVYVL 32


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 164 YLFLVITRIILRNHQICCHLFLV 232
           Y FL+++  +LR  Q CCH +LV
Sbjct: 546 YGFLLVS--LLRLRQFCCHPWLV 566


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,582,138
Number of Sequences: 5004
Number of extensions: 28439
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)