Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_A04
(514 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 125 4e-30
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 123 2e-29
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 31 0.077
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 28 0.94
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 1.2
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo... 27 1.2
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 3.8
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ... 26 3.8
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 26 3.8
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 5.0
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p... 25 5.0
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 25 6.7
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 25 6.7
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 125 bits (301), Expect = 4e-30
Identities = 51/88 (57%), Positives = 71/88 (80%)
Frame = +1
Query: 25 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 204
M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 205 KIHKRSKIKPFVKGVNYNHLMPTRYSVD 288
+I KRS++KPF+K +NYNHLMPTRY+++
Sbjct: 61 RIAKRSRVKPFIKVINYNHLMPTRYALE 88
Score = 38.7 bits (86), Expect = 5e-04
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 317 T*KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 427
T +P++R + + FEE+Y++GK+ WFF LRF
Sbjct: 100 TFSEPSQRSAAKKTVKNTFEEKYQTGKSAWFFTPLRF 136
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 123 bits (296), Expect = 2e-29
Identities = 58/126 (46%), Positives = 82/126 (65%), Gaps = 2/126 (1%)
Frame = +1
Query: 25 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 204
M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 205 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FSAKDLKGPS*AQEAAFQHKGPFRR 378
+I +RS++KPF+K VNYNHLMPTRY+++ K +A K P+ A K F
Sbjct: 61 RIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEE 120
Query: 379 EIQERK 396
+ Q K
Sbjct: 121 KYQSGK 126
Score = 43.2 bits (97), Expect = 2e-05
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +2
Query: 317 T*KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 427
T K+P +R R + FEE+Y+SGK+ WFF LRF
Sbjct: 100 TFKEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLRF 136
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 31.5 bits (68), Expect = 0.077
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +1
Query: 16 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 117
P+K+ + PG V ++L+GR+ G++ +V+ ++
Sbjct: 45 PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 27.9 bits (59), Expect = 0.94
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 18 IQDG*DYETWKSGAGPQRPVR 80
++ G + E WKSGAG Q P++
Sbjct: 432 VRGGMEVEVWKSGAGAQLPMK 452
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 31 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 114
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPBC8D2.12c |||mitochondrial DNA binding protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 27.5 bits (58), Expect = 1.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 78 VPAAEDQHHFSRFHNLTHLGWI 13
+P +HFSRF + T GWI
Sbjct: 7 IPFTRALYHFSRFRSFTTSGWI 28
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = -1
Query: 409 EPFVLSALVSLFETDPCVETQL---LALSW 329
EPF ++ ++S ++ PCV T L + L+W
Sbjct: 120 EPFQIARIISFEKSRPCVSTNLYDSVRLNW 149
>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 3.8
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -3
Query: 152 TKACPYGLSDV-PSS*FFTTMALRPAY--RPLRTSTTFPGFIIL 30
T AC YGL +V S+ FF +++R Y R ++ FP I++
Sbjct: 73 TMACNYGLKNVFSSASFFREVSVRMVYYVRYIQWLINFPLIIVM 116
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 25.8 bits (54), Expect = 3.8
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -1
Query: 478 CLWSITAIMFI-V*NYTLEPKLLEE--PFVLSALVSLFETDPCVETQLLALSWVLLGP 314
C++ + I+ + + N + +P L+ E FV L+ L +TD L L+W + P
Sbjct: 199 CVFIMDEIITVFINNSSNDPNLISENWDFVWKKLLQLVKTDGLAVVHTLVLNWNTIEP 256
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 5.0
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 207 FIFSHPFMNLARVSVDAGDESMSVWFVRCALVVILYDNGFT 85
FI F ++ D ESM F+R A +++ Y G T
Sbjct: 1092 FICQQVFQSVILAIHDPYFESMQSDFIRLACIILSYSQGIT 1132
>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 29 VRL*NLEKWCWSSAAGTQAVKPLS*RITTRAHLTNHTDMLSS 154
+RL L ++CWS ++ S R +LT ++++L++
Sbjct: 94 LRLQRLRQYCWSGGKRMESCLDTSLSTYERDYLTRYSELLAA 135
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 131 LSDVPSS*FFTTMALRPAYRPLRTSTTFPG 42
L ++P + FF T+ AY P S T G
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDG 718
>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 304
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 196 GKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKF 306
G+ KIH + +++ N+ H+ TR+ F KF
Sbjct: 85 GEKKIHFNQFYQEYIRDKNHVHMNATRWHTLSEFCKF 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,404
Number of Sequences: 5004
Number of extensions: 49400
Number of successful extensions: 130
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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