Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_A03
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.7  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   3.9  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      25   3.9  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    25   6.7  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   6.7  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    24   8.9  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    24   8.9  
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|...    24   8.9  

>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -1

Query: 265 YVIVFRPFPASSTFFISNEFLF--VYRINLIFVYIVNLLFN 149
           Y + FRP   SS   I    L+   YR N I++ ++  + N
Sbjct: 154 YTLYFRPMVVSSFAHIFGHLLYCMAYRANWIYLILIGRMLN 194


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 257 DDIFSKMDDDEMRMLSDEPNSSRDFSIGFGYYPGCVGDNREPANRSSG 400
           D+ +S  D  +  M SDE NSS+      G +P    +NRE +   SG
Sbjct: 615 DEGYSSDDSVDNEMYSDEENSSK------GAFPDEENENRELSEDYSG 656


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 257 DDIFSKMDDDEMRML-SDEPNSSRDF 331
           +D+FS   +DE R L +DE    RDF
Sbjct: 64  EDMFSDTSEDEKRTLPNDEAQKRRDF 89


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +2

Query: 98  DIDNLEEANNVN---EKFGNIEQKVNDINKYQVNTINK 202
           DID  + ++N +   E FGN   K+N +N + V+T+++
Sbjct: 34  DIDWNQASSNYSARQENFGNNSSKINSVNDH-VSTLSR 70


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/45 (22%), Positives = 25/45 (55%)
 Frame = +3

Query: 294 ECSRMSQIQAEISLLVLAITLDALVITENLPIVVLVLIYLDRTRL 428
           + S  ++ Q  + +L++++TL  + + E LP+ V + +     R+
Sbjct: 476 DSSSKNKGQEFLQILIVSVTLLVVAVPEGLPLAVTLALAFATNRM 520


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 95  VDIDNLEEANNVNEKFGNIEQKVNDINKYQVNTI 196
           V  D ++    + EK    EQ + D  +YQ NTI
Sbjct: 421 VGCDKMDPIRGIREKLLAFEQFLYDNPEYQKNTI 454


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 13/58 (22%), Positives = 27/58 (46%)
 Frame = +2

Query: 98  DIDNLEEANNVNEKFGNIEQKVNDINKYQVNTINKEKFVTDXXXXXXXXXXKYDDIFS 271
           D ++L+E + V +    IEQ  +D++   ++ I  E  + D          +  ++FS
Sbjct: 120 DSEDLDEESVVKDTEEIIEQAQHDVSLRNLSGIEDENIIDDGETAINEQKKREANVFS 177


>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 200

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 92  LVDIDNLEEANNVNEKFGNIEQKVNDINKYQVNTINK 202
           L D+ + +  +NV   F N+EQ  ++ N Y++   NK
Sbjct: 88  LYDVTDKKSFDNVRTWFSNVEQHASE-NVYKILIGNK 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,625,408
Number of Sequences: 5004
Number of extensions: 32257
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)