Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_P24
(543 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 81 1e-16
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 29 0.44
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 27 1.4
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 1.8
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 27 2.4
SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 3.1
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 26 3.1
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 26 3.1
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 25 5.5
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 7.2
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 25 7.2
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 25 7.2
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 25 9.5
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 9.5
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 81.0 bits (191), Expect = 1e-16
Identities = 49/143 (34%), Positives = 79/143 (55%), Gaps = 10/143 (6%)
Frame = +2
Query: 125 WADEVEIDQGALPPPSEVVEN--GLKIVTEYKYDNDNKKVKIVRTYK---IEKRVVSKSI 289
WAD+ + G P + +N G K + E++ D++ KKVK+ R + I +RV ++
Sbjct: 9 WADDEDYGTGL--PSIQTFDNPDGTKTMIEFRIDDNGKKVKVTRVIRKTVITERV-QHAV 65
Query: 290 AMRKTWSKFGDSANDKPGPNPATTNVSEDVFMQ----FITSKEESQRPDDGELDGLKPQS 457
A RK W KFG A G + TT+V E+V ++ + T+KEE Q D+ L K ++
Sbjct: 66 AERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQ--DEAALAAAKVKA 123
Query: 458 -NNVIFKCRICQGDHMTINCPFK 523
+ + +CR C+G+H T CP+K
Sbjct: 124 KGSSVVRCRACKGNHFTAQCPYK 146
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.44
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Frame = +2
Query: 134 EVEIDQGALPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSI-AMRKTWS 310
EVE+D+ + V LKIV E KY + + R +E + SI +R +
Sbjct: 106 EVELDKHVKQLQAAVDSGTLKIVDEKKYLREISQCNRTRKSFVELNALQTSIDTIRNELN 165
Query: 311 KFGDSANDKPGPNPATTNVSEDVFMQFITSKEESQRPDDG 430
+ D ND + + D F++ + +E ++ DG
Sbjct: 166 ELRDQLND------SESKKLSDKFVEIRSELDEVRKQQDG 199
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 161 PPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIA 292
PP ++VV+ K D++ + +V TY I K V+ +IA
Sbjct: 337 PPQADVVQACADKAISIKKSTDSRLLVVVSTYSIGKEKVAVAIA 380
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 27.1 bits (57), Expect = 1.8
Identities = 27/117 (23%), Positives = 49/117 (41%)
Frame = +2
Query: 107 DEIQSSWADEVEIDQGALPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKS 286
+E++ S +++V+ Q P SE + E K D+ + V T I +
Sbjct: 965 EEVKQSVSEQVDSAQLTSEPKSESLPKS----PEEKSDDTSNDVTTENTNDINGDSNMDN 1020
Query: 287 IAMRKTWSKFGDSANDKPGPNPATTNVSEDVFMQFITSKEESQRPDDGELDGLKPQS 457
+A T K D+ + ATT +E+ Q + + S P++ + L P+S
Sbjct: 1021 VA---TVDKSTDAVDTSTATVAATTTTAEEELPQKESQERSSPSPENQDSTPLAPKS 1074
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 26.6 bits (56), Expect = 2.4
Identities = 23/88 (26%), Positives = 32/88 (36%)
Frame = +2
Query: 221 NDNKKVKIVRTYKIEKRVVSKSIAMRKTWSKFGDSANDKPGPNPATTNVSEDVFMQFITS 400
N + V+ +TY V SKS+ S +D T D + S
Sbjct: 69 NSGRPVEAFKTYPSTPAVPSKSVLFHFYEPDENFSLSD-------TGRTKSDTALAARES 121
Query: 401 KEESQRPDDGELDGLKPQSNNVIFKCRI 484
E+S+ P D G+KP N C I
Sbjct: 122 SEKSEVPRDTRSAGIKPYKENNSSNCAI 149
>SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 228
Score = 26.2 bits (55), Expect = 3.1
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Frame = +2
Query: 110 EIQSSWADEVEIDQGALPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSI 289
+I S+ V D +P PS + L I + + N+N++++ V+ ++ + +V
Sbjct: 75 KIASNLGPMVISDGLHVPHPSNRFDFALSIAVIHHFSNENRRLQAVQ--EVLRPLVKGGK 132
Query: 290 AMRKTWSKFGDSANDKPGPNPATTNVSEDVFMQFITSKE-ESQRPDDGELDGLKPQSN 460
A+ W+ + N + G + + +DV++ +I ++ E EL G P N
Sbjct: 133 ALFFVWAL--EQKNSRRG---FSEDGPQDVYVPWILKRQYEYPNAKPEELKGHDPAEN 185
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 383 MQFITSKEESQRPDDGELDGLKPQSNNVIFK 475
+++ + +E Q+PD EL +K Q++ IFK
Sbjct: 203 VEYWSPEEPFQKPDTAELFNMKSQTDLYIFK 233
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 92 IMSPADEIQSSWADEVEIDQGALPPPSEVVENGLKIVTEYKYD 220
+ SP+++IQ E Q +P PS E+ L ++++ K D
Sbjct: 327 VPSPSEKIQDHVPSPSEKKQDRVPSPSNNKEDHLPLLSDEKLD 369
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +3
Query: 381 LCNSSLAKRKVNDLMMVSLMGLSHNPTMSSSS 476
LC++++ + + D V L+GLS+ T +S +
Sbjct: 456 LCDTNIGEESLPDAANVPLLGLSNKATTASET 487
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.0 bits (52), Expect = 7.2
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +2
Query: 167 PSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAMRKTWSKFGDSANDKPGP 346
PS + K + KY+N + + I R V+ S R+ + F D D+P
Sbjct: 50 PSPTLAGMAKRTLKLKYENMDAALSINR------EVLCYSKDAREIYYNFEDEVADEPAE 103
Query: 347 NPATTNVSEDV 379
PA+T+ + V
Sbjct: 104 APASTSSTPKV 114
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 199 NLKTIFNYFRWGWEGTLVNFNLISP 125
++K I N W + +L+NF ++SP
Sbjct: 303 DIKKILNSLVWNIKLSLINFGILSP 327
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 134 EVEIDQGALPPPSEVVENGLKIVTEYKY 217
EVE++ + P S EN + V +Y Y
Sbjct: 114 EVEVNSEVVKPDSATTENENRYVNQYNY 141
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +2
Query: 455 SNNVIF-KCRICQGDHMTINCP 517
+ ++F K R+ GDH+T+ CP
Sbjct: 209 ARGILFGKMRLELGDHVTVRCP 230
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +2
Query: 278 SKSIAMRKTWSKFGDSANDKPGPNPATTNVSEDVFMQFITSKEESQRPDDGELDGLKPQS 457
SK A FG +A P P P+T ++ + ++++S+ D D QS
Sbjct: 151 SKHNAFYDASQTFGSTAKVAPAPAPSTKTPLANISKPVVQAQKDSK---DNSWDDSSKQS 207
Query: 458 N 460
N
Sbjct: 208 N 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,220,191
Number of Sequences: 5004
Number of extensions: 43071
Number of successful extensions: 153
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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