Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_P24
(543 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1015 + 33512023-33512359,33513550-33514082 80 1e-15
02_05_1014 + 33510108-33510471,33510857-33511362 58 6e-09
10_07_0121 + 13078163-13078690,13078957-13078977 31 0.45
10_07_0086 - 12755485-12756540,12756994-12757283,12757391-12757643 31 0.45
01_03_0159 - 13325949-13326839 31 0.45
02_01_0519 - 3748415-3748432,3749010-3749041,3749474-3749606,374... 31 0.79
10_07_0123 + 13082680-13082982,13083730-13084659 30 1.0
10_07_0087 - 12762745-12763236 30 1.4
07_03_1728 + 29076733-29079069 29 2.4
01_06_1477 + 37645143-37647425 29 3.2
02_05_1259 + 35294797-35295600,35295776-35295841,35296390-35296491 28 5.5
12_02_0053 + 12908859-12908864,12909049-12909247,12909355-129094... 27 7.3
02_03_0415 + 18805541-18805610,18805962-18806128,18806616-188066... 27 7.3
01_06_0792 - 32031569-32033041,32033124-32033341,32033502-32033568 27 7.3
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 27 9.7
01_02_0028 - 10340253-10340619,10341110-10341615 27 9.7
>02_05_1015 + 33512023-33512359,33513550-33514082
Length = 289
Score = 80.2 bits (189), Expect = 1e-15
Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 11/144 (7%)
Frame = +2
Query: 125 WADEVEIDQGALP---PPSEVV---ENGLKIVTEYKYDNDNKKVKIVRTYKIEKRV---V 277
W + E D+G L PP V ENG K V EY++D+ KVK+ RT+++ K +
Sbjct: 12 WGELEEDDEGDLDFLLPPRVVSGPDENGFKKVVEYRFDDKGNKVKVTRTFRVRKIARARL 71
Query: 278 SKSIAMRKTWSKFGDSANDKPGPNPATTNVSEDVFMQFITSKEESQRPDDGELDGLKPQS 457
SKS R++W KFGD+ + G + E V + +++ P D L +S
Sbjct: 72 SKSAIERRSWPKFGDAVQEDVGARLTMVSTEEIVLERPRAPGSKAEEP-SASGDPLASKS 130
Query: 458 NNVIFKCRIC--QGDHMTINCPFK 523
V+ CR C +GDH T CP+K
Sbjct: 131 GAVLMVCRTCGKKGDHWTSKCPYK 154
>02_05_1014 + 33510108-33510471,33510857-33511362
Length = 289
Score = 57.6 bits (133), Expect = 6e-09
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Frame = +2
Query: 164 PPSEVV---ENGLKIVTEYKYDNDNKKVKIVRTYKIEKRV---VSKSIAMRKTWSKFGDS 325
PP V+ ENG+K EY+ + + K V++ T ++ + V+K A R+ W+KFGD+
Sbjct: 36 PPRVVIGPDENGIKKTVEYRLNEEGKAVRVTTTTRVREVARTRVTKRAAERRGWAKFGDA 95
Query: 326 A-NDKPGPNPATTNVSEDVFMQFITSKEESQRPDDGELDGLKPQSNNVIFKCRIC--QGD 496
A ND G + E V + +S+ P LD + CRIC +G
Sbjct: 96 AHNDDAGARLTVVSPEEIVLERPSAPGSKSEDPLIPALD-----KGAALMVCRICNAKGK 150
Query: 497 HMTINCPFK 523
H T CP K
Sbjct: 151 HWTSKCPNK 159
>10_07_0121 + 13078163-13078690,13078957-13078977
Length = 182
Score = 31.5 bits (68), Expect = 0.45
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 98 SPADEIQSSWADEVEIDQGALPPPS 172
+P+ E+ W DE EI GA+ PPS
Sbjct: 15 TPSSELLQDWYDEFEITYGAVTPPS 39
>10_07_0086 - 12755485-12756540,12756994-12757283,12757391-12757643
Length = 532
Score = 31.5 bits (68), Expect = 0.45
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 98 SPADEIQSSWADEVEIDQGALPPPS 172
+P+ E+ W DE EI GA+ PPS
Sbjct: 304 TPSSELLQDWYDEFEITYGAVAPPS 328
>01_03_0159 - 13325949-13326839
Length = 296
Score = 31.5 bits (68), Expect = 0.45
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 98 SPADEIQSSWADEVEIDQGALPPPS 172
+P+ E+ W DE EI GA+ PPS
Sbjct: 66 TPSSELLQDWYDEFEITYGAVAPPS 90
>02_01_0519 -
3748415-3748432,3749010-3749041,3749474-3749606,
3749702-3749765,3749948-3750010,3750101-3750243,
3750358-3750495,3750570-3750691,3750798-3750963,
3751058-3751180,3751325-3751396,3751484-3751591,
3752730-3752846,3752953-3753040,3753162-3753253,
3753378-3753490,3753994-3754127,3754209-3754564,
3754649-3754861
Length = 764
Score = 30.7 bits (66), Expect = 0.79
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 149 QGALPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVS-KSIAMRKTWSKFGDS 325
Q A PP+E N L+ V + KY D + KIE+++VS KS + W KF DS
Sbjct: 356 QVARQPPNERDYNILQTVHQNKYQEDPHAKEF--GIKIEEKLVSIKSRILPAPWLKFHDS 413
>10_07_0123 + 13082680-13082982,13083730-13084659
Length = 410
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 98 SPADEIQSSWADEVEIDQGALPPPS 172
+P+ E+ W DE E+ GA PPS
Sbjct: 209 APSSELPQDWYDEYEVAYGAAAPPS 233
>10_07_0087 - 12762745-12763236
Length = 163
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 98 SPADEIQSSWADEVEIDQGALPPPS 172
+P+ E+ W DE E+ GA+ PP+
Sbjct: 15 TPSSELPQDWYDEYEVAYGAVAPPA 39
>07_03_1728 + 29076733-29079069
Length = 778
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 77 VLKIGIMSPADEIQSSWADEVEIDQGALPPPSEVVENGLKIVTEY 211
+LK IM+P I ++W V A PPS V +G + T +
Sbjct: 496 ILKPDIMAPGLNILAAWPSSVARTDAAAAPPSFNVISGTSMATPH 540
>01_06_1477 + 37645143-37647425
Length = 760
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 74 TVLKIGIMSPADEIQSSWADEVEIDQGALPPPSEVVENGLKIVTEY 211
TVLK IM+P + +SWA+ V + G + P ++ +G + T +
Sbjct: 492 TVLKPDIMAPGSLVLASWAESVAV-VGNMTSPFNII-SGTSMATPH 535
>02_05_1259 + 35294797-35295600,35295776-35295841,35296390-35296491
Length = 323
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +2
Query: 320 DSANDKPGPNPATTNVSEDVFMQFITSKEESQRPDDGE 433
D+ N+K P NV+ + + + E +PDD E
Sbjct: 170 DANNEKKTEEPTVQNVNRVIDSSKVVASSEQNKPDDSE 207
>12_02_0053 +
12908859-12908864,12909049-12909247,12909355-12909431,
12909594-12909794
Length = 160
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 74 TVLKIGIMSPADEIQSSWADEVEIDQGALPPPSEVVENGLKIVTEYKYDNDNKKVK-IVR 250
+ ++ G++ A + A E+ PPP + + + IV +Y+Y K+++ IV
Sbjct: 30 SAMEQGLVVTAGHYYHATAGELLFKVAGSPPPQKPPKKAMIIVVKYRYVRCLKELRSIVD 89
Query: 251 TYKIEKR 271
+K++ R
Sbjct: 90 HFKVKVR 96
>02_03_0415 +
18805541-18805610,18805962-18806128,18806616-18806645,
18807459-18807515,18808268-18808337,18808915-18810998
Length = 825
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 174 SDGGGRAPWSISTSSAHED*ISSA 103
SDGGG AP+S S+S+A D +A
Sbjct: 6 SDGGGGAPFSSSSSAAAPDNFDAA 29
>01_06_0792 - 32031569-32033041,32033124-32033341,32033502-32033568
Length = 585
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 171 DGGGRAPWSISTSSAHED*ISSAGDMIPIFNT 76
DG R PW++ T ED + +A ++PI++T
Sbjct: 301 DGSARDPWTLCTVQQVED-VKAAVRVLPIWST 331
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 27.1 bits (57), Expect = 9.7
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Frame = +2
Query: 170 SEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAMRKTWSKFGDSANDKPGPN 349
SE +++G I + + + K+ +TY K A W K D AND+
Sbjct: 112 SEDIKSGYSITLTFSPNPYFEDTKLTKTYSFSDDEAVKVKATSIRWKKGMDIANDRAYTK 171
Query: 350 PATTN--VSEDVFMQFITSKEES 412
+ E F F + K S
Sbjct: 172 KGDKRILIDESFFTWFNSEKNRS 194
>01_02_0028 - 10340253-10340619,10341110-10341615
Length = 290
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/53 (24%), Positives = 22/53 (41%)
Frame = +2
Query: 272 VVSKSIAMRKTWSKFGDSANDKPGPNPATTNVSEDVFMQFITSKEESQRPDDG 430
VV + W G P P+P ++ VSE ++ K+++ P G
Sbjct: 22 VVVAASGAEARWYGGGGGGGYSPSPSPVSSIVSEQLYASLFLHKDDAACPARG 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,364,801
Number of Sequences: 37544
Number of extensions: 274408
Number of successful extensions: 892
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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