Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P24
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50044-2|CAA90354.1|  256|Caenorhabditis elegans Hypothetical pr...    74   8e-14
Z81494-4|CAB04050.2|  319|Caenorhabditis elegans Hypothetical pr...    31   0.41 
AF002198-7|AAF99935.1|  693|Caenorhabditis elegans Hypothetical ...    30   0.94 
Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z78545-3|CAB01767.1|  306|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U39993-1|AAA81086.1|  594|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z77663-14|CAB01214.2|  568|Caenorhabditis elegans Hypothetical p...    28   3.8  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    28   3.8  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   3.8  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   3.8  
AJ581300-1|CAE46113.1|  568|Caenorhabditis elegans flavin monoox...    28   3.8  
U97593-1|AAB52875.1|  715|Caenorhabditis elegans Hypothetical pr...    25   4.3  
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    28   5.0  
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z49068-9|CAA88860.1|  556|Caenorhabditis elegans Hypothetical pr...    27   6.6  
U29379-7|ABC71826.1|  710|Caenorhabditis elegans Patterned expre...    27   6.6  
U29379-6|AAF99981.3|  677|Caenorhabditis elegans Patterned expre...    27   6.6  
U29379-5|ABC71825.1|  777|Caenorhabditis elegans Patterned expre...    27   6.6  
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.      27   8.7  

>Z50044-2|CAA90354.1|  256|Caenorhabditis elegans Hypothetical
           protein F22B5.2 protein.
          Length = 256

 Score = 73.7 bits (173), Expect = 8e-14
 Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 2/145 (1%)
 Frame = +2

Query: 95  MSPADEIQSSWADEVEIDQGALPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRV 274
           M+PA E+ S WA+ VE D     P  +   +G +  T +  + D  + K+V  +K+  + 
Sbjct: 1   MAPAPEVVS-WAEAVEQDNA---PHIQEGADGTRTETAFT-EVDGVRWKVVTQFKVINKR 55

Query: 275 VSKSIAMRKTWSKFGDSANDKPGPNPATTNVSEDVFMQFITSKEESQRPD-DGELDGLKP 451
           V K +A RK W KFG    +  GP  ATT V+E+V MQF  ++   Q  D   +    K 
Sbjct: 56  VPKVVADRKKWVKFGSCKGEPAGPQVATTYVAEEVDMQFTRNRAGEQILDVQEDKQTAKT 115

Query: 452 QSNNVIFKCRICQG-DHMTINCPFK 523
            S      CR C+G DH + +CP+K
Sbjct: 116 TSRE---HCRHCKGNDHWSTHCPYK 137


>Z81494-4|CAB04050.2|  319|Caenorhabditis elegans Hypothetical
           protein F02E9.3 protein.
          Length = 319

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 22/83 (26%), Positives = 38/83 (45%)
 Frame = +2

Query: 131 DEVEIDQGALPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAMRKTWS 310
           D +   + +  PPS      LK +   K D  +K+ K   + K  KR+ S++I + K WS
Sbjct: 47  DSLRSSKSSSSPPSRNSSLNLKTL---KKDRKSKEGKPKSSSKHGKRMTSRAIHVSKKWS 103

Query: 311 KFGDSANDKPGPNPATTNVSEDV 379
           +F    +     +  T  + ED+
Sbjct: 104 QFNRREDKTDYLDDETMQILEDL 126


>AF002198-7|AAF99935.1|  693|Caenorhabditis elegans Hypothetical
           protein F35F10.10 protein.
          Length = 693

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +2

Query: 209 YKYD-NDNKKVK--IVRTYKIEKRVVSKSIAMRKTWSKFGDSANDKPGPNPATTNVSE 373
           +K D ND K V+  ++  Y  E  ++SK+I  RKT  K    + D P  + ATT VSE
Sbjct: 422 FKTDVNDRKTVETFLIEVYWRES-ILSKAILHRKT-CKLKTCSEDTPETSTATTTVSE 477


>Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical
           protein K07C5.3 protein.
          Length = 493

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +2

Query: 128 ADEVEIDQGALPPPSEVVE-NGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAMRKT 304
           AD   I +G  P   E+ + NGL  V E  Y+ND +K    +T   + +V   S    K 
Sbjct: 321 ADASIILKGVHPKAPEIFQSNGLDSVIEKYYNNDFEKSAQQKTSSSKNKVAEPSFKKSKR 380

Query: 305 WSKFGDSAND 334
             +  D  +D
Sbjct: 381 QEESDDEESD 390


>Z78545-3|CAB01767.1|  306|Caenorhabditis elegans Hypothetical
           protein M03B6.4 protein.
          Length = 306

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +2

Query: 245 VRTYKIEKRVVSKSIAMRKTWSKFGDSANDKP----GPNPATTNVSE 373
           +  YKI    +S  +  RKT  KFGD A D P      NP TT+  E
Sbjct: 6   ISQYKINISSLSSPLK-RKTTRKFGDDAYDSPKYFMEGNPTTTSTFE 51


>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
           protein T19D12.4b protein.
          Length = 1015

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 173 EVVENGLKIVTEYKYDNDNKKVKIV 247
           + V+   K+V +YKY NDN +V I+
Sbjct: 394 QYVDFAKKLVAQYKYGNDNTRVGII 418


>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
           protein T19D12.4a protein.
          Length = 1028

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 173 EVVENGLKIVTEYKYDNDNKKVKIV 247
           + V+   K+V +YKY NDN +V I+
Sbjct: 407 QYVDFAKKLVAQYKYGNDNTRVGII 431


>U39993-1|AAA81086.1|  594|Caenorhabditis elegans Hypothetical
           protein F47E1.3 protein.
          Length = 594

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 366 CLKMYLCNSSLAKRKVNDLMMVSLMGLSHNPTMSSS 473
           CL+ +L N S  K ++ND  M+ +   +H P  SSS
Sbjct: 33  CLRQHLENHSTMK-ELNDFSMIEISSQTHLPMCSSS 67


>Z77663-14|CAB01214.2|  568|Caenorhabditis elegans Hypothetical
           protein F53F4.5 protein.
          Length = 568

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 86  IGIMSPADEIQSSWADEVEIDQGALPPPSEVVEN 187
           IG ++P  EIQS WA  V   +  LP   E +++
Sbjct: 361 IGSIAPISEIQSRWAARVFAGRCQLPSSQEQIDD 394


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 258  KSRSVLYLRVLQCVKLGASLETLPMISLDQIQL 356
            +S  ++ L V Q  KLGAS ETL  I  D I++
Sbjct: 3296 ESEQIIELNVPQSPKLGASHETLVPIGQDDIEV 3328


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 258  KSRSVLYLRVLQCVKLGASLETLPMISLDQIQL 356
            +S  ++ L V Q  KLGAS ETL  I  D I++
Sbjct: 3296 ESEQIIELNVPQSPKLGASHETLVPIGQDDIEV 3328


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 258  KSRSVLYLRVLQCVKLGASLETLPMISLDQIQL 356
            +S  ++ L V Q  KLGAS ETL  I  D I++
Sbjct: 3296 ESEQIIELNVPQSPKLGASHETLVPIGQDDIEV 3328


>AJ581300-1|CAE46113.1|  568|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 568

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 86  IGIMSPADEIQSSWADEVEIDQGALPPPSEVVEN 187
           IG ++P  EIQS WA  V   +  LP   E +++
Sbjct: 361 IGSIAPISEIQSRWAARVFAGRCQLPSSQEQIDD 394


>U97593-1|AAB52875.1|  715|Caenorhabditis elegans Hypothetical
           protein C46G7.3 protein.
          Length = 715

 Score = 25.4 bits (53), Expect(2) = 4.3
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 218 DNDNKKVKIVRTYKIEKRVVSKSIAMRKTWSKFGDSANDKPGPNPATTNV 367
           DND  K   +     E   ++ S A+R T    G   +  PGP P  T +
Sbjct: 557 DNDRPKNNKLSPTVTEGHQITMSEALRATLEHDGYETHWTPGPGPDLTRL 606



 Score = 21.0 bits (42), Expect(2) = 4.3
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = +2

Query: 476 CRICQGDHMTINCPFKHTQI 535
           C+IC   H  + CP    ++
Sbjct: 621 CQICGVGHTLLRCPLASFEV 640


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = +2

Query: 182 ENGLKIVTEYKYDNDNKKV----KIVRTYKIEKRVVSKSIAMRKTWSKFGDSANDKPGPN 349
           +N  K + E K ++ +K +    K V+   +  ++ +K  + +  WSK  +   ++  P 
Sbjct: 165 DNKFKKMAEAKKEDGSKNLRNNLKTVKKESVFTQIANKKKSDKPEWSKKKEEKKEESAPE 224

Query: 350 PATTNVSEDVFMQFITSKEESQRPDD 427
           P    V E+        +EE +  ++
Sbjct: 225 PVIEPVEEEETAASEGEEEEEEADEE 250


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = +2

Query: 182 ENGLKIVTEYKYDNDNKKV----KIVRTYKIEKRVVSKSIAMRKTWSKFGDSANDKPGPN 349
           +N  K + E K ++ +K +    K V+   +  ++ +K  + +  WSK  +   ++  P 
Sbjct: 165 DNKFKKMAEAKKEDGSKNLRNNLKTVKKESVFTQIANKKKSDKPEWSKKKEEKKEESAPE 224

Query: 350 PATTNVSEDVFMQFITSKEESQRPDD 427
           P    V E+        +EE +  ++
Sbjct: 225 PVIEPVEEEETAASEGEEEEEEADEE 250


>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
           protein C23H4.6 protein.
          Length = 1137

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +2

Query: 131 DEVEIDQGALPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIA-----M 295
           DEVE+    +      V+N  KIV + K++    + + +R  K+E  ++ K IA     +
Sbjct: 331 DEVEVQDEEIKESRADVDNLRKIVNDLKHEIKMSESQ-MRRKKVEIMLIRKEIAKAQKQL 389

Query: 296 RKTWSKFG 319
           R+   KFG
Sbjct: 390 REALGKFG 397


>Z49068-9|CAA88860.1|  556|Caenorhabditis elegans Hypothetical
           protein K01C8.9 protein.
          Length = 556

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +2

Query: 200 VTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAMRKTWSKFG-DSANDKPGPNPATTNVSED 376
           + +Y     +K+V   + YKIEK+V   +  ++K   K G  +  +K    P +    E+
Sbjct: 1   MAKYCLKKTSKRVSCAKRYKIEKKVRDHNRKVKKEAKKNGTTNKKEKTISVPNSCPFKEE 60

Query: 377 VFMQFITSKEE 409
           + +Q    +E+
Sbjct: 61  ILVQAEQEREK 71


>U29379-7|ABC71826.1|  710|Caenorhabditis elegans Patterned
           expression site protein22, isoform c protein.
          Length = 710

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 246 LGPTKSRSVLYLRVLQCVKLGASLETLPMISLDQIQLRQM 365
           LG  K+  VL + +  CV  G     LPM+ L++I+ ++M
Sbjct: 228 LGWQKTIWVLAVMIFSCVFYGYLYRPLPMVDLNEIRDQEM 267


>U29379-6|AAF99981.3|  677|Caenorhabditis elegans Patterned
           expression site protein22, isoform a protein.
          Length = 677

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 246 LGPTKSRSVLYLRVLQCVKLGASLETLPMISLDQIQLRQM 365
           LG  K+  VL + +  CV  G     LPM+ L++I+ ++M
Sbjct: 173 LGWQKTIWVLAVMIFSCVFYGYLYRPLPMVDLNEIRDQEM 212


>U29379-5|ABC71825.1|  777|Caenorhabditis elegans Patterned
           expression site protein22, isoform b protein.
          Length = 777

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 246 LGPTKSRSVLYLRVLQCVKLGASLETLPMISLDQIQLRQM 365
           LG  K+  VL + +  CV  G     LPM+ L++I+ ++M
Sbjct: 228 LGWQKTIWVLAVMIFSCVFYGYLYRPLPMVDLNEIRDQEM 267


>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical protein
            F22B5.7 protein.
          Length = 1415

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
 Frame = +2

Query: 47   ILCKLVHQTTV---LKIGIMSPADEIQSSWADEVEIDQGALPPPSEVVE--NGLKI--VT 205
            +LC L+   T    +  GI     ++ S W DE+E  +  L   S++V+  N   +  +T
Sbjct: 1125 LLCGLILAMTESLQMNTGITELVSKLSSKWCDELEKRRAQL-RASDIVDSFNAFYVCALT 1183

Query: 206  EYKYDNDNKKVKIVRTY 256
            E K D  +  + IV  Y
Sbjct: 1184 ELKMDISDSHILIVDNY 1200


>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
          Length = 1415

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
 Frame = +2

Query: 47   ILCKLVHQTTV---LKIGIMSPADEIQSSWADEVEIDQGALPPPSEVVE--NGLKI--VT 205
            +LC L+   T    +  GI     ++ S W DE+E  +  L   S++V+  N   +  +T
Sbjct: 1125 LLCGLILAMTESLQMNTGITELVSKLSSKWCDELEKRRAQL-RASDIVDSFNAFYVCALT 1183

Query: 206  EYKYDNDNKKVKIVRTY 256
            E K D  +  + IV  Y
Sbjct: 1184 ELKMDISDSHILIVDNY 1200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,393,290
Number of Sequences: 27780
Number of extensions: 247178
Number of successful extensions: 756
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)