Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_P23
(526 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 29 0.56
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 27 2.3
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom... 26 3.0
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 26 3.0
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 26 4.0
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar... 26 4.0
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 23 5.0
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 9.1
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 9.1
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 28.7 bits (61), Expect = 0.56
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 95 EQIDDGKSLQIIYQKLVAAFSSLSQYIPSQVTGYAASGPTSWTSYLFS-PASIPVWS 262
E I G +L + K + + ++P V Y+A S+ ++F+ P ++PVW+
Sbjct: 125 ENILYGSNLSSLLSKTTHSILDILAWVPYGVMHYSAPFIISFILFIFAPPGTLPVWA 181
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 278 SLLKQLISGDYPDLLTLVRTYRPRSINPLDEMPAKLRAVVING-QHIFTFDG 430
+L K +I D DLL + PRSIN + ++P L I+ ++ F++DG
Sbjct: 366 ALSKHIIFFDL-DLLNNISFPIPRSINAIQQLPCFLIDTGISAKEYDFSYDG 416
>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 248 IPVWSGDASWSLLKQLISGDYPDLLTLVRTYRPRSINPLDEMP 376
I + +A SLL+ L S P +L V R SI+PL+E P
Sbjct: 286 IEIVQSNALPSLLRLLRSSYLPLILASVACIRNISIHPLNESP 328
>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 349 SWSVGTNQSKQVGIVSRYQLFEQT 278
+W+ G SK++G V R +F+QT
Sbjct: 507 NWNAGLLYSKRLGPVGRAMIFQQT 530
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 25.8 bits (54), Expect = 4.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 148 CNQLLINYLQ*FSIVDLFRAEFLGYVFIQSFSEFSELLVGK 26
C + I+YL FS+ DLF A F Q F S +++ K
Sbjct: 370 CLDMAISYLMEFSLEDLFVAS----NFYQPFDSISSMVLSK 406
>SPCC1223.02 |nmt1|thi3|no message in thiamine
Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 25.8 bits (54), Expect = 4.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 388 AKFSRHFVKWVDRSWSVGTNQSKQVGIV 305
A FS H + V R W+ TN SK++GI+
Sbjct: 262 AYFS-HDISNVPRDWNKVTNYSKRLGII 288
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 22.6 bits (46), Expect(2) = 5.0
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +2
Query: 158 SLSQYIPSQVTGYAASGPTSWTSYLFSPASIPVWSG 265
SL + + S GY PT S +++P+ +G
Sbjct: 619 SLMKILESNADGYKQMSPTKAPQVFESESNVPINNG 654
Score = 21.0 bits (42), Expect(2) = 5.0
Identities = 14/49 (28%), Positives = 20/49 (40%)
Frame = +2
Query: 347 RSINPLDEMPAKLRAVVINGQHIFTFDGKHLTFPGQCRYVLIHDYVDRN 493
+SI+ +L V GQ FDG T P Q + ++D N
Sbjct: 657 QSIDKESNSNTQLPQVETEGQQQSVFDGNIGTIPYQAYNMNEDSFIDIN 705
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 24.6 bits (51), Expect = 9.1
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +2
Query: 137 KLVAAFSSLSQYIPSQVTGYAASGPTSWTSYLFSPASIPVWSGDASWSLLK 289
K+ F+ + + P+ +G+ + +WT Y+ P S + WS+++
Sbjct: 560 KMFKIFNFIREQYPALKSGWKSVKLRNWTEYVHFPNSGKTPTEVGVWSIVR 610
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 24.6 bits (51), Expect = 9.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 144 LQRSVHSRNTYRPRSPVMLLLDLHHGLVICSLLRASRYGLATRHG 278
+ SVH + PR PV D H+G + + LA+ HG
Sbjct: 343 IDSSVHCWDLRSPRFPVNSFYDWHNGATQVKWNYKNPHILASSHG 387
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,191,867
Number of Sequences: 5004
Number of extensions: 45790
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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