Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P23
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81043-8|CAB02804.2|  550|Caenorhabditis elegans Hypothetical pr...    34   0.054
U61237-1|AAB17542.1|  550|Caenorhabditis elegans M89 protein.          34   0.054
AL023813-2|CAA19424.2|  550|Caenorhabditis elegans Hypothetical ...    34   0.054
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    30   1.2  
Z81146-2|CAB03526.1|  340|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81583-7|CAB04668.1|  268|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z82272-2|CAB05216.1|  342|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p...    27   8.2  
L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembl...    27   8.2  
AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein...    27   8.2  

>Z81043-8|CAB02804.2|  550|Caenorhabditis elegans Hypothetical
           protein C29F3.2 protein.
          Length = 550

 Score = 34.3 bits (75), Expect = 0.054
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
 Frame = +2

Query: 176 PSQVTGYAASGPTSWTSYLFSPASIPVWSGDASWSLLKQLISGDYPDLL-TLVRTYRPRS 352
           P+Q  GYA   P  W  +   PA   V   +     + +L  GD+   L     TY P  
Sbjct: 323 PAQPVGYAPYAPAGWQLHYCFPADAEVNVYEKGVKRMDELEVGDWVQALHGKETTYSPVK 382

Query: 353 --INPLDEMPAKLRAVVINGQHIFTFDGKHLTFPGQCR 460
             ++   E  A+    ++     FT   KHL F   C+
Sbjct: 383 YWLHRDPEQEAEFVEFLLENGESFTLTEKHLVFATDCQ 420


>U61237-1|AAB17542.1|  550|Caenorhabditis elegans M89 protein.
          Length = 550

 Score = 34.3 bits (75), Expect = 0.054
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
 Frame = +2

Query: 176 PSQVTGYAASGPTSWTSYLFSPASIPVWSGDASWSLLKQLISGDYPDLL-TLVRTYRPRS 352
           P+Q  GYA   P  W  +   PA   V   +     + +L  GD+   L     TY P  
Sbjct: 323 PAQPVGYAPYAPAGWQLHYCFPADAEVNVYEKGVKRMDELEVGDWVQALHGKETTYSPVK 382

Query: 353 --INPLDEMPAKLRAVVINGQHIFTFDGKHLTFPGQCR 460
             ++   E  A+    ++     FT   KHL F   C+
Sbjct: 383 YWLHRDPEQEAEFVEFLLENGESFTLTEKHLVFATDCQ 420


>AL023813-2|CAA19424.2|  550|Caenorhabditis elegans Hypothetical
           protein C29F3.2 protein.
          Length = 550

 Score = 34.3 bits (75), Expect = 0.054
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
 Frame = +2

Query: 176 PSQVTGYAASGPTSWTSYLFSPASIPVWSGDASWSLLKQLISGDYPDLL-TLVRTYRPRS 352
           P+Q  GYA   P  W  +   PA   V   +     + +L  GD+   L     TY P  
Sbjct: 323 PAQPVGYAPYAPAGWQLHYCFPADAEVNVYEKGVKRMDELEVGDWVQALHGKETTYSPVK 382

Query: 353 --INPLDEMPAKLRAVVINGQHIFTFDGKHLTFPGQCR 460
             ++   E  A+    ++     FT   KHL F   C+
Sbjct: 383 YWLHRDPEQEAEFVEFLLENGESFTLTEKHLVFATDCQ 420


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
           complex protein protein7 protein.
          Length = 1217

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 348 DRSTHLTKCLLNFALWSSTDSTFSRSTANT 437
           D+ TH+T   ++ AL SSTDST S+S   T
Sbjct: 850 DKETHVTTTPVSVALPSSTDSTQSKSAIPT 879


>Z81146-2|CAB03526.1|  340|Caenorhabditis elegans Hypothetical
           protein K10D11.2 protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +2

Query: 311 PDLLTLVRTYRPRSIN---PLDEMPAKLRAVVINGQHIFTFDG 430
           P  +TLV+TY    IN   PL+     L+ VV +GQ  FTF G
Sbjct: 297 PTDMTLVKTYTGLEINKAVPLNFQGDVLQFVVSSGQADFTFKG 339


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
           protein K03H1.5 protein.
          Length = 1385

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 338 YRPRSINPLDEMPAKLRAVVINGQHIFTFDGKHLTFPGQCRYVL 469
           Y  R  N   +  A     +    H+ T+DG   T PG+  YVL
Sbjct: 837 YWRRMTNGCQDYRAPAAGYIYGEPHVITYDGIRYTMPGKGYYVL 880


>Z81583-7|CAB04668.1|  268|Caenorhabditis elegans Hypothetical
           protein T02G6.7 protein.
          Length = 268

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +2

Query: 356 NPLDEMPAKLRAVVING---QHIFTFDGKHLTFPGQCRYV 466
           +PLD  P K+ + +IN    ++  TFDG+   F   CR++
Sbjct: 77  DPLDLFPMKMESPLINFLDFKYNITFDGEIWNFKYNCRFI 116


>Z82272-2|CAB05216.1|  342|Caenorhabditis elegans Hypothetical
           protein F55G11.5 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +2

Query: 311 PDLLTLVRTYRPRSIN---PLDEMPAKLRAVVINGQHIFTFDG 430
           P + T+V+ Y    IN   PL+     L+ VV +G+  FTFDG
Sbjct: 298 PTVGTIVKNYTALEINKAVPLNFQGEVLQFVVSSGKADFTFDG 340


>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
           protein Y80D3A.2 protein.
          Length = 1467

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = +2

Query: 314 DLLTLVRTYRPRSINPLDEMPAKLRAVVINGQHI-----FTFDGKHLTFPGQCRYVLIHD 478
           + +TL    RP  +  L+E P      VI  ++I     +T DG         +++ +HD
Sbjct: 415 ETITLHCERRPNQLTQLNEKPLFPTEKVIWDENIIPYENYTGDGVLALDKLNLQFLTLHD 474

Query: 479 YVDRNFTVLLQLQN 520
           Y+ RNF  L QL++
Sbjct: 475 YLLRNFN-LFQLES 487


>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 22/63 (34%), Positives = 34/63 (53%)
 Frame = +3

Query: 39   SSENSLKL*MNT*PRNSARNRSTMENHCK*FIKSWLQRSVHSRNTYRPRSPVMLLLDLHH 218
            S+ NSLK  M+   RNS     T +     F +   Q +++  ++ RP +PV++L  LHH
Sbjct: 1563 SAANSLKDEMSLHIRNSNEAPETAK-----FDRKVYQTTLY--DSTRPGTPVLVLNALHH 1615

Query: 219  GLV 227
            G V
Sbjct: 1616 GTV 1618


>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 22/63 (34%), Positives = 34/63 (53%)
 Frame = +3

Query: 39   SSENSLKL*MNT*PRNSARNRSTMENHCK*FIKSWLQRSVHSRNTYRPRSPVMLLLDLHH 218
            S+ NSLK  M+   RNS     T +     F +   Q +++  ++ RP +PV++L  LHH
Sbjct: 1563 SAANSLKDEMSLHIRNSNEAPETAK-----FDRKVYQTTLY--DSTRPGTPVLVLNALHH 1615

Query: 219  GLV 227
            G V
Sbjct: 1616 GTV 1618


>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
            protein F25F2.2 protein.
          Length = 4307

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 22/63 (34%), Positives = 34/63 (53%)
 Frame = +3

Query: 39   SSENSLKL*MNT*PRNSARNRSTMENHCK*FIKSWLQRSVHSRNTYRPRSPVMLLLDLHH 218
            S+ NSLK  M+   RNS     T +     F +   Q +++  ++ RP +PV++L  LHH
Sbjct: 1563 SAANSLKDEMSLHIRNSNEAPETAK-----FDRKVYQTTLY--DSTRPGTPVLVLNALHH 1615

Query: 219  GLV 227
            G V
Sbjct: 1616 GTV 1618


>L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembly
           abnormal protein 4 protein.
          Length = 808

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 428 GKHLTFPGQCRYVLIHDYVD 487
           G H     QCRYVL+ DY D
Sbjct: 717 GTHTYRDNQCRYVLVTDYND 736


>AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein
           protein.
          Length = 808

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 428 GKHLTFPGQCRYVLIHDYVD 487
           G H     QCRYVL+ DY D
Sbjct: 717 GTHTYRDNQCRYVLVTDYND 736


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,186,581
Number of Sequences: 27780
Number of extensions: 261112
Number of successful extensions: 722
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)