Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P22
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   1.5  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   4.7  
SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex |...    25   8.2  

>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 428 ISNNNSLYIVCSGFSIAMKPSTHVRLRTPHHPQVFF 321
           + N++++Y   S      K  TH+    P HP VFF
Sbjct: 110 VENSSNIYDPSSPPDSPRKQQTHLGTIPPEHPDVFF 145


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 365 THVRLRTPHHPQVFFIIFAC 306
           T  RL T H P+VF+++  C
Sbjct: 93  TPSRLNTAHRPEVFYLLECC 112


>SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 587 TKNIAKGLNKTQAPNH 540
           T+ +A GLNKT A NH
Sbjct: 389 TQRMALGLNKTDAKNH 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,404
Number of Sequences: 5004
Number of extensions: 44716
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)