Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_P22
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0474 + 29604201-29604527,29604634-29604988,29605071-296054...    30   1.6  
03_03_0203 - 15417743-15417997,15418708-15419159,15419234-15419636     29   2.1  
03_03_0200 - 15396187-15396246,15396345-15396566,15396645-153971...    29   2.1  
06_01_0847 - 6451525-6451678,6452870-6453066,6454300-6454591,645...    29   3.6  
06_01_0838 - 6360232-6360460,6360571-6360719,6360825-6360933,636...    28   6.3  
04_01_0288 + 3824337-3826385                                           28   6.3  
04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814           28   6.3  

>01_06_0474 +
           29604201-29604527,29604634-29604988,29605071-29605411,
           29606502-29606940,29607558-29607913
          Length = 605

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 247 ASVPTHQLRQVHNSELYRGRQAKIMKNTCGWCGVLNRTCVDGFMAMEKP 393
           A VP   LR +         QA+ +++TCGW G +  +C  G +  + P
Sbjct: 551 AGVPDDLLRLMSAERRLGVAQARSLRSTCGWAGPVG-SCTAGSVDFDGP 598


>03_03_0203 - 15417743-15417997,15418708-15419159,15419234-15419636
          Length = 369

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 347 FLIVRASTASWQWKSHCRR 403
           FL   + T  WQW++HCRR
Sbjct: 239 FLCRLSRTGYWQWENHCRR 257


>03_03_0200 -
           15396187-15396246,15396345-15396566,15396645-15397102,
           15397183-15397645
          Length = 400

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 347 FLIVRASTASWQWKSHCRR 403
           FL   + T  WQW++HCRR
Sbjct: 261 FLCRLSRTGYWQWENHCRR 279


>06_01_0847 -
           6451525-6451678,6452870-6453066,6454300-6454591,
           6454622-6454654,6454869-6455102,6455204-6455259,
           6455552-6456754
          Length = 722

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 126 NMDSNNKPAPKDRNPNSTQSTSYNPWNLL 212
           N+ S+ +P  K+  P S + T++NP NL+
Sbjct: 185 NIGSDAEPKSKEVQPKSEERTTWNPLNLI 213


>06_01_0838 -
           6360232-6360460,6360571-6360719,6360825-6360933,
           6361446-6362276,6362865-6362969,6363084-6363180,
           6363303-6363341,6363435-6363477
          Length = 533

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +1

Query: 241 KIASVPTHQLRQVHNSELYRGRQAKIMK--NTCGWC 342
           KI   PT+  +  HNS+ Y G  AK  K   T  WC
Sbjct: 426 KICFAPTY--KYTHNSDAYAGETAKSKKKRRTPAWC 459


>04_01_0288 + 3824337-3826385
          Length = 682

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 480 RNSVSYVRASNFFAHVVSHGVVRRLRLIQ 566
           +N +   RASN F + V HG  R LRL Q
Sbjct: 553 KNIIESCRASNGFTNEVKHGGQRSLRLKQ 581


>04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814
          Length = 582

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 480 RNSVSYVRASNFFAHVVSHGVVRRLRLIQ 566
           +N +   RASN F + V HG  R LRL Q
Sbjct: 453 KNIIESCRASNGFTNEVKHGGQRSLRLKQ 481


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,862,572
Number of Sequences: 37544
Number of extensions: 253347
Number of successful extensions: 611
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)